Bioconductor Gosim

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913

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GOSim GOSemSim

updated 23 months ago by Lluís Revilla Sancho ▴ 760 • written 24 months ago by eliska.ochodkova ▴ 10

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911

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GO.db GOfuncR GO GOSim goProfiles

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by yeluo • 0

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1.0k

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GOSim

updated 6.3 years ago by Lluís Revilla Sancho ▴ 760 • written 6.3 years ago by monifass ▴ 10

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1.6k

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gosim gosemsim

updated 7.8 years ago by Lluís Revilla Sancho ▴ 760 • written 9.3 years ago by s.apocarpum ▴ 10

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2.3k

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GO Yeast GOSim GO Yeast GOSim

updated 7.9 years ago by solis • 0 • written 12.7 years ago by Guest User ★ 13k

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1.1k

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Yeast Organism GOSim Yeast Organism GOSim

12.3 years ago Pablo Andretta Jaskowiak ▴ 10

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941

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GOSim GOSim

12.4 years ago ANIRBAN BHAR ▴ 60

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1.5k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

updated 13.4 years ago by Olivier Lucas ▴ 40 • written 13.4 years ago by Marc Carlson ★ 7.2k

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1.4k

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GO Organism biomaRt GOSim GO Organism biomaRt GOSim

13.4 years ago Olivier Lucas ▴ 40

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1.4k

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GOSim GOSim

updated 13.7 years ago by Wolfgang Huber ★ 13k • written 13.7 years ago by LEMAITRE Hervé Université Paris Sud ▴ 10

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1.4k

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Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim

updated 15.4 years ago by Marc Carlson ★ 7.2k • written 15.4 years ago by Gang Chen ▴ 20

11 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0