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goexpress
•
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0
votes
2
replies
2.3k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.1 years ago
Chruut
• 0
2
votes
8
replies
1.5k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.2 years ago by
kevin.rue
▴ 350 • written 2.2 years ago by
grolo
• 0
0
votes
0
replies
556
views
GOexpress pvalue and gene sets
GOexpress
2.9 years ago
jms2520
▴ 10
0
votes
4
replies
1.3k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.9 years ago by
kevin.rue
▴ 350 • written 4.9 years ago by
atorson
• 0
1
vote
2
replies
1.5k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.2 years ago by
kevin.rue
▴ 350 • written 5.2 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.3 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.5k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.9 years ago
sina.zboron
• 0
9
votes
8
replies
4.5k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.8 years ago
Bogdan
▴ 670
5
votes
4
replies
1.8k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
mforde84
▴ 20
0
votes
3
replies
4.1k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
2.9k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.8 years ago by
kevin.rue
▴ 350 • written 8.8 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.5k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.2 years ago by
kevin.rue
▴ 350 • written 9.2 years ago by
willj
▴ 30
3
votes
6
replies
2.0k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.2 years ago by
kevin.rue
▴ 350 • written 9.2 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.1k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.2 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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