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goexpress
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0
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2
replies
2.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.3 years ago • updated 2.2 years ago
Chruut
• 0
2
votes
8
replies
1.5k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.3 years ago by
kevin.rue
▴ 350 • written 2.3 years ago by
grolo
• 0
0
votes
0
replies
583
views
GOexpress pvalue and gene sets
GOexpress
3.0 years ago
jms2520
▴ 10
0
votes
4
replies
1.3k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.1 years ago by
kevin.rue
▴ 350 • written 5.1 years ago by
atorson
• 0
1
vote
2
replies
1.6k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.4 years ago by
kevin.rue
▴ 350 • written 5.4 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.5 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.5k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.1 years ago
sina.zboron
• 0
9
votes
8
replies
4.7k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.0 years ago
Bogdan
▴ 670
5
votes
4
replies
1.9k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
mforde84
▴ 20
0
votes
3
replies
4.2k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.8 years ago by
kevin.rue
▴ 350 • written 8.8 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
2.9k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.9 years ago by
kevin.rue
▴ 350 • written 8.9 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.6k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.3 years ago by
kevin.rue
▴ 350 • written 9.3 years ago by
willj
▴ 30
3
votes
6
replies
2.1k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.3 years ago by
kevin.rue
▴ 350 • written 9.3 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.2k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.3 years ago
martin.hoelzer
▴ 20
14 results • Page
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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