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goProfiles
•
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0
votes
1
reply
945
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 2.5 years ago by
Basti
▴ 780 • written 2.5 years ago by
yeluo
• 0
3
votes
9
replies
3.3k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
10.5 years ago
artur
▴ 80
0
votes
0
replies
1.8k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
11.0 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.4k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
11.6 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.8k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
11.6 years ago
Guest User
★ 13k
0
votes
2
replies
1.3k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 12.2 years ago by
Marc Carlson
★ 7.2k • written 12.2 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.2k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 12.5 years ago by
Steve Lianoglou
★ 13k • written 12.5 years ago by
Guest User
★ 13k
0
votes
2
replies
1.8k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 14.8 years ago by
Marc Carlson
★ 7.2k • written 14.8 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.6k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 14.8 years ago by
James W. MacDonald
68k • written 14.8 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
924
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
14.8 years ago
wei tie
▴ 30
0
votes
0
replies
1.2k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
15.6 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
1.1k
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
15.8 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
2.2k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.3k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 16.8 years ago by
Alex Sanchez
▴ 20 • written 16.8 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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