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gmapr
•
reset
0
votes
0
replies
358
views
gmapR source package contains x86_64 binaries
gmapR
10 months ago
Tom Lin
• 0
0
votes
1
reply
763
views
gmapR install failed
gmapR
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
conbward
• 0
1
vote
4
replies
1.2k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
6.1 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.6k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.3k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
karl.nordstroem
• 0
0
votes
4
replies
1.8k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.5k
views
gmapR failure to build TP53Genome in osx
gmapR
8.3 years ago
jls2282
• 0
3
votes
6
replies
1.8k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
sean.taylor
• 0
0
votes
10
replies
2.3k
views
Running gmap tool via gmapR package?
gmapR
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.4 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.3k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.5k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 9.4 years ago by
Michael Lawrence
★ 11k • written 9.4 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.8k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.9 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.1k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
10.2 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.3k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.3 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.5k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.9 years ago by
Michael Lawrence
★ 11k • written 11.9 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.7k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
12.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.3k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
Guest User
★ 13k
0
votes
2
replies
2.5k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 12.2 years ago by
Michael Lawrence
★ 11k • written 12.2 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.3k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
12.6 years ago
Martin Morgan
25k
19 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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