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gmapR
•
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0
votes
0
replies
219
views
gmapR source package contains x86_64 binaries
gmapR
4 months ago
Tom Lin
• 0
0
votes
1
reply
668
views
gmapR install failed
gmapR
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
conbward
• 0
1
vote
4
replies
1.1k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.6 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.4k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.1k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
karl.nordstroem
• 0
0
votes
4
replies
1.6k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.4k
views
gmapR failure to build TP53Genome in osx
gmapR
7.8 years ago
jls2282
• 0
3
votes
6
replies
1.6k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
sean.taylor
• 0
0
votes
10
replies
2.1k
views
Running gmap tool via gmapR package?
gmapR
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.1k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.3k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.6k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.4 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.0k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.7 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.1k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.8 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.4k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.4 years ago by
Michael Lawrence
★ 11k • written 11.4 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.6k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.2k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Guest User
★ 13k
0
votes
2
replies
2.3k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.7 years ago by
Michael Lawrence
★ 11k • written 11.7 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.2k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
12.1 years ago
Martin Morgan
25k
19 results • Page
1 of 1
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST?
by
Andrew_McDavid
▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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