Bioconductor Glmnet

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glmnet cox LOOCV k-fold cross validation

updated 5.6 years ago by chris86 ▴ 420 • written 5.6 years ago by Talip ▴ 10

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tcga rnaseq glmnet voom deseq2

8.1 years ago panagiotis.mokos ▴ 40

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rnaseq glmnet limma voom deseq2

8.1 years ago panagiotis.mokos ▴ 40

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glmnet deseq2

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by panagiotis.mokos ▴ 40

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adaptive-lasso snv biomarkers cv glmnet

8.3 years ago crichard • 0

5 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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