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glmnet
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Which one is more trustable for Cox Proportional Hazard Model with Lasso penalty? LOOCV or K-fold cross-validation?
glmnet
cox
LOOCV
k-fold
cross validation
updated 5.7 years ago by
chris86
▴ 420 • written 5.7 years ago by
Talip
▴ 10
3
votes
12
replies
4.5k
views
Problem about use of TCGA rna-seq rsem gene results for regularized cox regression modeling
tcga
rnaseq
glmnet
voom
deseq2
8.1 years ago
panagiotis.mokos
▴ 40
0
votes
4
replies
2.8k
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Normalization and transformation of RNA-seq raw data for regularized linear regression models
rnaseq
glmnet
limma
voom
deseq2
8.1 years ago
panagiotis.mokos
▴ 40
4
votes
4
replies
3.1k
views
ABOUT TRANSFORMATION OF RNA-SEQ DATA FOR GLMNET COX SURVIVAL ANALYSIS
glmnet
deseq2
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
panagiotis.mokos
▴ 40
0
votes
1
reply
2.4k
views
Adaptive Lasso and CrossValidation for SNV selection
adaptive-lasso
snv
biomarkers
cv
glmnet
8.4 years ago
crichard
• 0
5 results • Page
1 of 1
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Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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