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glmfit
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger
edger main and interaction effects
glmfit
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
D
▴ 10
3
votes
1
reply
5.9k
views
edgeR: exactTest, glmFIt or glmQLFit approach?
edger
rnaseq
glm
glmfit
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
alessia.donato
• 0
0
votes
3
replies
2.3k
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Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
8.5 years ago
david.hughes
• 0
7
votes
5
replies
3.9k
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edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 9.1 years ago by
Aaron Lun
★ 28k • written 9.1 years ago by
cadeans
• 0
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Comment: DESeq error: counts matrix should be numeric, currently it has mode: character
by
Kucsera
• 0
After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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