Bioconductor GlmGamPoi

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DESeq2 independentfiltering glmGamPoi

4 months ago • updated 3 months ago Bob ▴ 10

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1.0k

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DESeq2 glmGamPoi offset edgeR scRNAseq

updated 5 months ago by Gordon Smyth 52k • written 6 months ago by Alec • 0

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676

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DESeq2 glmGamPoi

10 months ago • updated 9 months ago I-Hsuan Lin ▴ 10

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2.4k

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DESeq2 glmGamPoi DEXSeq

updated 18 months ago by alexandresegers ▴ 20 • written 2.2 years ago by jeremymsimon ▴ 20

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2.1k

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glmGamPoi

updated 2.1 years ago by ATpoint ★ 4.6k • written 2.1 years ago by sina.tadayon • 0

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1.5k

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glmGamPoi BiocManager

updated 2.1 years ago by Vincent J. Carey, Jr. 6.7k • written 2.1 years ago by i.am.filippov • 0

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2.7k

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DESeq2 glmGamPoi scRNAseq

3.8 years ago tatyana.perlova • 0

7 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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