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glmGamPoi
•
reset
1
vote
4
replies
1.1k
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Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
DESeq2
independentfiltering
glmGamPoi
8 months ago • updated 7 months ago
Bob
▴ 10
1
vote
8
replies
1.4k
views
Advice on appropriateness of an offset in glmGamPoi/edgeR
DESeq2
glmGamPoi
offset
edgeR
scRNAseq
updated 9 months ago by
Gordon Smyth
52k • written 9 months ago by
Alec
• 0
1
vote
3
replies
799
views
Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
DESeq2
glmGamPoi
13 months ago
I-Hsuan Lin
▴ 10
8
votes
7
replies
2.6k
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
updated 21 months ago by
alexandresegers
▴ 20 • written 2.5 years ago by
jeremymsimon
▴ 20
1
vote
1
reply
2.3k
views
Instaling glmGamPoi
glmGamPoi
updated 2.4 years ago by
ATpoint
★ 4.8k • written 2.4 years ago by
sina.tadayon
• 0
0
votes
3
replies
1.6k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 2.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.4 years ago by
i.am.filippov
• 0
5
votes
4
replies
3.0k
views
Using DESeq2 with GlmGamPoi
DESeq2
glmGamPoi
scRNAseq
4.1 years ago
tatyana.perlova
• 0
7 results • Page
1 of 1
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Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
skiaphrene
▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
shocked.tick.zyet
• 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage
by
Nick
• 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
Votes
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
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story.benjamin
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snijesh
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Gordon Smyth
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