Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ggtree
•
reset
0
votes
0
replies
555
views
ggtree tip label position (depth)
ggtree
9 months ago
Roope
• 0
1
vote
4
replies
4.8k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 18 months ago by
xushuangbin
• 0 • written 18 months ago by
Hank
• 0
0
votes
3
replies
1.0k
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
22 months ago
christian.dina
• 0
0
votes
0
replies
682
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
22 months ago
christian.dina
• 0
2
votes
2
replies
1.1k
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 7 months ago by
Hancer
• 0 • written 22 months ago by
John
▴ 10
0
votes
1
reply
1.9k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 2.4 years ago by
shepherl
4.1k • written 2.4 years ago by
Muhammad Isa
• 0
2
votes
3
replies
9.3k
views
ggtree install
ggtree
rvcheck
updated 3.3 years ago by
Brock
• 0 • written 3.3 years ago by
bjarke
▴ 10
0
votes
0
replies
1.2k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage
ggtree
3.6 years ago
moria.robinson
• 0
0
votes
0
replies
918
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
3.8 years ago
Vincent
• 0
3
votes
3
replies
1.4k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r
ggtree
phylogeny
updated 4.5 years ago by
Guangchuang Yu
★ 1.2k • written 4.5 years ago by
sd.gamboa.t
▴ 10
6
votes
2
replies
4.9k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 5.0 years ago by
saladi
• 0 • written 8.7 years ago by
map2085
▴ 40
0
votes
1
reply
1.7k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.7 years ago by
Guangchuang Yu
★ 1.2k • written 5.9 years ago by
alisa.postma
• 0
0
votes
1
reply
2.0k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
6.6 years ago
jdimopoulos21
• 0
2
votes
2
replies
1.8k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.8 years ago by
markus.riester
▴ 130 • written 6.8 years ago by
martin
• 0
0
votes
1
reply
1.9k
views
tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 7.0 years ago by
Guangchuang Yu
★ 1.2k • written 7.0 years ago by
werdnus
• 0
0
votes
3
replies
4.1k
views
Unable to reroot RAxML tree with ggtree
ggtree
raxml
reroot
tree
7.0 years ago
kevin.liam.keegan
• 0
0
votes
1
reply
2.2k
views
ggtree: time-scaled tree s
phylogenetic
ggtree
calibration
fossils
times-scale
updated 7.4 years ago by
Guangchuang Yu
★ 1.2k • written 7.4 years ago by
aelgorriaga
• 0
1
vote
2
replies
2.0k
views
EBImage cannot read .png images from Image.R
ebimage
ggtree
updated 7.6 years ago by
Andrzej Oleś
▴ 750 • written 7.6 years ago by
benauxier
• 0
2
votes
3
replies
5.8k
views
Error during EBImage installation
ebimage
ggtree
package installation
updated 7.7 years ago by
Andrzej Oleś
▴ 750 • written 7.7 years ago by
slagter.maarten
▴ 10
0
votes
1
reply
2.3k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree
ggplot2
phyloseq
geom_boxplot
facet_plot
updated 7.9 years ago by
Guangchuang Yu
★ 1.2k • written 7.9 years ago by
matthew.wipperman
• 0
2
votes
7
replies
2.6k
views
Visualize lineage tree using ggtree
ggtree
lineage
8.5 years ago • updated 8.4 years ago
yun YAN
▴ 20
0
votes
1
reply
1.7k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 8.4 years ago by
Guangchuang Yu
★ 1.2k • written 8.4 years ago by
723388
• 0
2
votes
0
replies
1.3k
views
News:
ggtree published in MEE
ggtree
News
8.4 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.5k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 9.3 years ago by
Guangchuang Yu
★ 1.2k • written 9.3 years ago by
david.wyllie
• 0
5
votes
3
replies
13k
views
ggtree - trouble displaying longer label names
ggtree
updated 9.3 years ago by
Guangchuang Yu
★ 1.2k • written 9.3 years ago by
Alan Smith
▴ 150
9
votes
8
replies
7.0k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.9 years ago by
remi.tournebize
▴ 10 • written 10.0 years ago by
Guangchuang Yu
★ 1.2k
26 results • Page
1 of 1
Recent ...
Replies
Comment: How can I generate a heatmap and clustering of differentially expressed genes in
by
Renuka
• 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Awards
• All
Popular Question
to
Martin Morgan
25k
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
Joseph Fass
▴ 70
Popular Question
to
Peter Hickey
▴ 750
Popular Question
to
Gordon Smyth
52k
Locations
• All
New York,
just now
India,
47 minutes ago
United States,
1 hour ago
Hong Kong,
1 hour ago
United States,
2 hours ago
Traffic: 588 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6