Showing : ggtree • reset
0
votes
0
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418
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ggtree tip label position (depth)
ggtree
7 months ago Roope • 0
1
vote
4
replies
4.5k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 15 months ago by • 0 • written 15 months ago by • 0
0
votes
3
replies
958
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
19 months ago christian.dina • 0
0
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0
replies
621
views
Using a clustree object to draw a "classical" dendogram
ggplot dendogram ggtreeExtra clustree ggtree
19 months ago christian.dina • 0
2
votes
2
replies
997
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 4 months ago by • 0 • written 19 months ago by ▴ 10
0
votes
1
reply
1.7k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 2.2 years ago by 4.1k • written 2.2 years ago by • 0
2
votes
3
replies
9.2k
views
ggtree install
ggtree rvcheck
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
0
replies
1.2k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage ggtree
3.4 years ago moria.robinson • 0
0
votes
0
replies
881
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio EPA jplace RAxML ggtree
3.6 years ago Vincent • 0
3
votes
3
replies
1.4k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r ggtree phylogeny
updated 4.3 years ago by ★ 1.2k • written 4.3 years ago by ▴ 10
6
votes
2
replies
4.8k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 4.8 years ago by • 0 • written 8.5 years ago by ▴ 40
0
votes
1
reply
1.6k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.5 years ago by ★ 1.2k • written 5.7 years ago by • 0
0
votes
1
reply
1.9k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree treeio
6.3 years ago jdimopoulos21 • 0
2
votes
2
replies
1.7k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.6 years ago by ▴ 130 • written 6.6 years ago by • 0
0
votes
1
reply
1.8k
views
tip_glom and annotations?
ggtree treeio phyloseq annotation tip_glom
updated 6.8 years ago by ★ 1.2k • written 6.8 years ago by • 0
0
votes
3
replies
3.9k
views
Unable to reroot RAxML tree with ggtree
ggtree raxml reroot tree
6.8 years ago kevin.liam.keegan • 0
0
votes
1
reply
2.1k
views
ggtree: time-scaled tree s
phylogenetic ggtree calibration fossils times-scale
updated 7.2 years ago by ★ 1.2k • written 7.2 years ago by • 0
1
vote
2
replies
2.0k
views
EBImage cannot read .png images from Image.R
ebimage ggtree
updated 7.4 years ago by ▴ 750 • written 7.4 years ago by • 0
2
votes
3
replies
5.6k
views
Error during EBImage installation
ebimage ggtree package installation
updated 7.4 years ago by ▴ 750 • written 7.5 years ago by ▴ 10
0
votes
1
reply
2.3k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by • 0
2
votes
7
replies
2.5k
views
Visualize lineage tree using ggtree
ggtree lineage
8.3 years ago • updated 8.2 years ago yun YAN ▴ 20
0
votes
1
reply
1.6k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by • 0
2
votes
0
replies
1.3k
views
News: ggtree published in MEE
ggtree News
8.2 years ago Guangchuang Yu ★ 1.2k
0
votes
1
reply
2.4k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by • 0
5
votes
3
replies
13k
views
ggtree - trouble displaying longer label names
ggtree
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by ▴ 150
9
votes
8
replies
7.0k
views
News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 9.7 years ago by ▴ 10 • written 9.8 years ago by ★ 1.2k
26 results • Page 1 of 1
Recent ...
Replies
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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