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ggtree
•
reset
0
votes
0
replies
607
views
ggtree tip label position (depth)
ggtree
10 months ago
Roope
• 0
1
vote
4
replies
5.0k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 19 months ago by
xushuangbin
• 0 • written 19 months ago by
Hank
• 0
0
votes
3
replies
1.1k
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
23 months ago
christian.dina
• 0
0
votes
0
replies
711
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
23 months ago
christian.dina
• 0
2
votes
2
replies
1.1k
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 8 months ago by
Hancer
• 0 • written 23 months ago by
John
▴ 10
0
votes
1
reply
1.9k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 2.5 years ago by
shepherl
4.1k • written 2.5 years ago by
Muhammad Isa
• 0
2
votes
3
replies
9.4k
views
ggtree install
ggtree
rvcheck
updated 3.3 years ago by
Brock
• 0 • written 3.4 years ago by
bjarke
▴ 10
0
votes
0
replies
1.2k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage
ggtree
3.7 years ago
moria.robinson
• 0
0
votes
0
replies
937
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
3.9 years ago
Vincent
• 0
3
votes
3
replies
1.5k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r
ggtree
phylogeny
updated 4.6 years ago by
Guangchuang Yu
★ 1.2k • written 4.6 years ago by
sd.gamboa.t
▴ 10
6
votes
2
replies
5.0k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 5.1 years ago by
saladi
• 0 • written 8.8 years ago by
map2085
▴ 40
0
votes
1
reply
1.8k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.8 years ago by
Guangchuang Yu
★ 1.2k • written 6.0 years ago by
alisa.postma
• 0
0
votes
1
reply
2.1k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
6.6 years ago
jdimopoulos21
• 0
2
votes
2
replies
1.8k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.8 years ago by
markus.riester
▴ 130 • written 6.8 years ago by
martin
• 0
0
votes
1
reply
1.9k
views
tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 7.0 years ago by
Guangchuang Yu
★ 1.2k • written 7.0 years ago by
werdnus
• 0
0
votes
3
replies
4.2k
views
Unable to reroot RAxML tree with ggtree
ggtree
raxml
reroot
tree
7.1 years ago
kevin.liam.keegan
• 0
0
votes
1
reply
2.2k
views
ggtree: time-scaled tree s
phylogenetic
ggtree
calibration
fossils
times-scale
updated 7.5 years ago by
Guangchuang Yu
★ 1.2k • written 7.5 years ago by
aelgorriaga
• 0
1
vote
2
replies
2.1k
views
EBImage cannot read .png images from Image.R
ebimage
ggtree
updated 7.7 years ago by
Andrzej Oleś
▴ 750 • written 7.7 years ago by
benauxier
• 0
2
votes
3
replies
5.8k
views
Error during EBImage installation
ebimage
ggtree
package installation
updated 7.7 years ago by
Andrzej Oleś
▴ 750 • written 7.7 years ago by
slagter.maarten
▴ 10
0
votes
1
reply
2.4k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree
ggplot2
phyloseq
geom_boxplot
facet_plot
updated 8.0 years ago by
Guangchuang Yu
★ 1.2k • written 8.0 years ago by
matthew.wipperman
• 0
2
votes
7
replies
2.7k
views
Visualize lineage tree using ggtree
ggtree
lineage
8.6 years ago • updated 8.4 years ago
yun YAN
▴ 20
0
votes
1
reply
1.7k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 8.5 years ago by
Guangchuang Yu
★ 1.2k • written 8.5 years ago by
723388
• 0
2
votes
0
replies
1.4k
views
News:
ggtree published in MEE
ggtree
News
8.5 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.5k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 9.4 years ago by
Guangchuang Yu
★ 1.2k • written 9.4 years ago by
david.wyllie
• 0
5
votes
3
replies
13k
views
ggtree - trouble displaying longer label names
ggtree
updated 9.4 years ago by
Guangchuang Yu
★ 1.2k • written 9.4 years ago by
Alan Smith
▴ 150
9
votes
8
replies
7.1k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 10.0 years ago by
remi.tournebize
▴ 10 • written 10.1 years ago by
Guangchuang Yu
★ 1.2k
26 results • Page
1 of 1
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I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
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by
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Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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Mark Dunning
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shepherl
4.1k
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Fred Hutch (Recruiting)
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