Bioconductor Ggplot

Showing : ggplot • reset

votes

replies

1.6k

views

DESeq2 ggplot PCA

written 6 months ago by robledoj13 • 0

votes

replies

1.0k

views

ggplot

updated 22 months ago by Konstantinos Yeles ▴ 80 • written 22 months ago by R_diot • 0

votes

replies

688

views

ggplot dendogram ggtreeExtra clustree ggtree

22 months ago christian.dina • 0

votes

replies

754

views

TCseq ggplot

2.6 years ago jochen • 0

votes

replies

2.4k

views

ggplot

3.1 years ago nattzy94 ▴ 20

vote

764

views

ggplot

updated 3.8 years ago by Kevin Blighe ★ 4.0k • written 3.8 years ago by abhisek001 • 0

votes

replies

829

views

ggplot2 ggplot cmplot

5.8 years ago gens8094 • 0

votes

replies

819

views

ggplot cmplot ggplot2

5.9 years ago gens8094 • 0

votes

23k

views

edger ggplot

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by mictadlo ▴ 10

votes

2.0k

views

edger ggplot

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by mictadlo ▴ 10

vote

1.7k

views

ggplot2 ggplot plot

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by alptaciroglu ▴ 50

11 results • Page 1 of 1

Recent ...

Replies

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

Awards • All