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Konstantinos Yeles
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written 8.9 years ago by
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Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Gordon Smyth
52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Andre
•
0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Comment: DESeq error: counts matrix should be numeric, currently it has mode: character
by
Kucsera
•
0
After applying your suggestion, the following error pops up:
```
Error in mde(x) : 'list' object cannot be coerced to type 'double'
```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★
4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do:
`mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
•
0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
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