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Konstantinos Yeles
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written 2.0 years ago by
R_diot
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updated 3.9 years ago by
Kevin Blighe
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updated 7.5 years ago by
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written 7.5 years ago by
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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
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Gordon Smyth
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I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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Luca
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0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0
![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly?
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James W. MacDonald
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If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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Luca
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0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
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If you check the underlying code a bit you find that there is a file with data sources:
```r
modes_file <- system.file("extdata", "metadat…
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