Bioconductor Ggcyto

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ggcyto

updated 2.4 years ago by shepherl 4.1k • written 2.4 years ago by philippe.hauchamps ▴ 10

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813

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FlowCytometry flowCore openCyto ggcyto

2.5 years ago Dennis.hinkel • 0

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1.0k

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ggcyto

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by alex • 0

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ggcyto

2.6 years ago alex • 0

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FlowCytometry flowCore ggcyto

updated 2.6 years ago by SamGG ▴ 360 • written 2.6 years ago by alex • 0

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ggcyto

3.0 years ago Robert Baer ▴ 70

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1.2k

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CytoML ggcyto cytoml

3.1 years ago FL • 0

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1.2k

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flowCore ggcyto FlowCytometryData

updated 3.6 years ago by Jiang, Mike ★ 1.3k • written 4.0 years ago by Elizabeth • 0

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1.1k

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software error flow cytometry ggcyto flowAI

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by Robert Baer ▴ 70

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2.2k

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ggcyto flowWorkspace flow cytometry flowjo

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by andrej.stoll.de ▴ 10

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1.4k

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ggcyto ggcyto_arrange autoplot

updated 5.0 years ago by Jake Wagner ▴ 310 • written 5.0 years ago by alavy ▴ 30

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1.8k

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flowcore ggcyto

updated 7.1 years ago by Jiang, Mike ★ 1.3k • written 7.1 years ago by Andrew Box ▴ 10

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1.1k

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ggcyto autoplot axis

7.2 years ago anders.tondell ▴ 30

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2.0k

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flowCore ggcyto

updated 8.2 years ago by Jiang, Mike ★ 1.3k • written 8.2 years ago by jaera • 0

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2.0k

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ggcyto

updated 8.4 years ago by Jiang, Mike ★ 1.3k • written 8.4 years ago by anders.tondell ▴ 30

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1.8k

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flowcore ggcyto

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.3 years ago by OT • 0

16 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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