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Showing :
getgeo
•
reset
2
votes
6
replies
1.8k
views
error reading GSE using getGEO()
r
geo
getgeo
6.4 years ago
jaleh.amo
• 0
2
votes
2
replies
1.4k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.8 years ago by
James W. MacDonald
67k • written 6.8 years ago by
dnedveck
• 0
3
votes
2
replies
3.7k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.8 years ago
rubi
▴ 110
3
votes
4
replies
1.5k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.8 years ago by
Sean Davis
21k • written 6.8 years ago by
umahajan
▴ 10
3
votes
11
replies
4.6k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.9 years ago by
Sean Davis
21k • written 7.7 years ago by
jblack29
• 0
3
votes
1
reply
1.3k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 7.1 years ago by
James W. MacDonald
67k • written 7.1 years ago by
cg
▴ 10
0
votes
2
replies
1.8k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.7 years ago by
James W. MacDonald
67k • written 7.7 years ago by
rk489
• 0
2
votes
2
replies
1.8k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.7 years ago by
Sean Davis
21k • written 7.7 years ago by
svlachavas
▴ 840
2
votes
2
replies
2.5k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
8.1 years ago
hzc363
▴ 20
0
votes
2
replies
2.3k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.8 years ago
xishan78
• 0
0
votes
0
replies
1.1k
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.8 years ago
alptaciroglu
▴ 50
0
votes
1
reply
4.1k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.9 years ago
maedakus
▴ 10
2
votes
4
replies
1.8k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.9 years ago
rfb
• 0
2
votes
2
replies
2.0k
views
getGEO error
getgeo
geoquery
updated 9.0 years ago by
Gordon Smyth
52k • written 9.0 years ago by
maedakus
▴ 10
4
votes
8
replies
7.5k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
9.2 years ago
alptaciroglu
▴ 50
2
votes
4
replies
3.3k
views
getGEO function not identifying local file
geoquery
getGEO
9.3 years ago
Prasanth
▴ 20
16 results • Page
1 of 1
Recent ...
Replies
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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