Showing : getSeq • reset
1
vote
3
replies
2.1k
views
Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome ORFik getSeq
3.8 years ago • updated 3.7 years ago hauken_heyken ▴ 80
0
votes
1
reply
879
views
Error Message in signeR
signeR getseq
updated 5.6 years ago by ▴ 10 • written 5.6 years ago by • 0
4
votes
1
reply
1.8k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome getSeq
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 110
1
vote
2
replies
1.6k
views
Error in BSGenome "getSeq" function
R bsgenome getseq
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
3
votes
1
reply
5.8k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 80
1
vote
3
replies
1.6k
views
NAs values when importing BED file using import function
rtracklayer NA BED getseq
9.1 years ago Dimitris Polychronopoulos ▴ 80
0
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2
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2.4k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome getseq
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
7 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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