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getSeq
•
reset
1
vote
3
replies
1.8k
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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome
ORFik
getSeq
3.3 years ago
hauken_heyken
▴ 80
0
votes
1
reply
757
views
Error Message in signeR
signeR
getseq
updated 5.1 years ago by
renan.valieris
▴ 10 • written 5.1 years ago by
TRASA
• 0
4
votes
1
reply
1.7k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome
getSeq
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
rubi
▴ 110
1
vote
2
replies
1.4k
views
Error in BSGenome "getSeq" function
R
bsgenome
getseq
updated 7.5 years ago by
James W. MacDonald
66k • written 7.5 years ago by
pm16057
• 0
3
votes
1
reply
5.4k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
TimothéeFlutre
▴ 80
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.6 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
2
replies
2.2k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
getseq
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
dborgesrmit
• 0
7 results • Page
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Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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