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Showing :
getGEO
•
reset
2
votes
6
replies
1.8k
views
error reading GSE using getGEO()
r
geo
getgeo
6.5 years ago
jaleh.amo
• 0
2
votes
2
replies
1.4k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.8 years ago by
James W. MacDonald
67k • written 6.8 years ago by
dnedveck
• 0
3
votes
2
replies
3.8k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.9 years ago
rubi
▴ 110
3
votes
4
replies
1.5k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.9 years ago by
Sean Davis
21k • written 6.9 years ago by
umahajan
▴ 10
3
votes
11
replies
4.6k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 7.0 years ago by
Sean Davis
21k • written 7.8 years ago by
jblack29
• 0
3
votes
1
reply
1.3k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 7.2 years ago by
James W. MacDonald
67k • written 7.2 years ago by
cg
▴ 10
0
votes
2
replies
1.9k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.8 years ago by
James W. MacDonald
67k • written 7.8 years ago by
rk489
• 0
2
votes
2
replies
1.8k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.8 years ago by
Sean Davis
21k • written 7.8 years ago by
svlachavas
▴ 840
2
votes
2
replies
2.5k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
8.2 years ago
hzc363
▴ 20
0
votes
2
replies
2.3k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.9 years ago
xishan78
• 0
0
votes
0
replies
1.1k
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.9 years ago
alptaciroglu
▴ 50
0
votes
1
reply
4.1k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.9 years ago
maedakus
▴ 10
2
votes
4
replies
1.8k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
9.0 years ago
rfb
• 0
2
votes
2
replies
2.0k
views
getGEO error
getgeo
geoquery
updated 9.0 years ago by
Gordon Smyth
52k • written 9.0 years ago by
maedakus
▴ 10
4
votes
8
replies
7.6k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
9.3 years ago
alptaciroglu
▴ 50
2
votes
4
replies
3.3k
views
getGEO function not identifying local file
geoquery
getGEO
9.4 years ago
Prasanth
▴ 20
16 results • Page
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Recent ...
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Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
alserg
▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
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Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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