Bioconductor GetGEO

Showing : getGEO • reset

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r geo getgeo

6.4 years ago jaleh.amo • 0

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geoquery getgeo probeset

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by dnedveck • 0

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GEOquery getGEO

6.8 years ago rubi ▴ 110

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geoquery getgeo

updated 6.8 years ago by Sean Davis 21k • written 6.8 years ago by umahajan ▴ 10

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geoquery error getgeo microarray geo

updated 6.9 years ago by Sean Davis 21k • written 7.7 years ago by jblack29 • 0

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getGEO

updated 7.1 years ago by James W. MacDonald 67k • written 7.1 years ago by cg ▴ 10

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geoquery getgeo R

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by rk489 • 0

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geoquery affymetrix microarrays windows8 getGEO

updated 7.7 years ago by Sean Davis 21k • written 7.7 years ago by svlachavas ▴ 840

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geoquery getgeo GEO

8.1 years ago hzc363 ▴ 20

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getgeo

8.8 years ago xishan78 • 0

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getgeo r

8.8 years ago alptaciroglu ▴ 50

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getGEO

8.8 years ago maedakus ▴ 10

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geoquery getgeo

8.9 years ago rfb • 0

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getgeo geoquery

updated 9.0 years ago by Gordon Smyth 52k • written 9.0 years ago by maedakus ▴ 10

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getGEO R GEOquery

9.2 years ago alptaciroglu ▴ 50

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geoquery getGEO

9.3 years ago Prasanth ▴ 20

16 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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