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Comment: how many significant figures are there in DESeq2 output
by
ATpoint
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4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Too many significant genes when integrating gtex and tcga
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Jane
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I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
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Matthew McCormack
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Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05.
My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
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ATpoint
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4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
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