Bioconductor Genomicrange

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GenomicRange GenomicRanges

14 months ago mat149 ▴ 80

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by hong • 0

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genomicrange

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by AZ ▴ 30

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genomicrange intersect

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by AZ ▴ 30

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Comment: blockwiseModule crashes in the end and doesn't generate modules by drivingdirectionsonline • 0

Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…

Comment: DeSeq Strategies for run to run Replication by Michael Love 43k

You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…

Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

Comment: DiffBind can't find a DAR by Mengjun • 0

Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…

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Comment: Differential expression analysis using two TCGA datasets

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

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