Showing : genomicfiles • reset
6
votes
7
replies
1.0k
views
findOverlaps(), queryHits and subjectHits()
GenomicFiles
updated 5 months ago by 16k • written 5 months ago by • 0
0
votes
0
replies
768
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
3.5 years ago koushik • 0
2
votes
6
replies
1.5k
views
memory leak when subsampling BAM
GenomicFiles ShortRead Rsamtools
3.9 years ago robmaz77 ▴ 20
1
vote
2
replies
917
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 80
3
votes
2
replies
1.1k
views
ranges input for GenomicFiles
genomicfiles
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 80
3
votes
2
replies
1.3k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles reduceByRange
updated 7.3 years ago by ★ 6.8k • written 7.3 years ago by ▴ 180
3
votes
3
replies
1.3k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles BiocParallel
updated 7.5 years ago by 4.1k • written 7.6 years ago by ▴ 20
4
votes
2
replies
1.5k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools genomicalignments genomicfiles
updated 8.5 years ago by 16k • written 8.5 years ago by ▴ 30
1
vote
1
reply
1.7k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles rsamtools
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
2
votes
2
replies
2.8k
views
How to randomly sample BAM files
rsamtools genomicalignments genomicfiles
updated 9.4 years ago by 25k • written 9.4 years ago by ▴ 70
0
votes
0
replies
1.1k
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles
10.3 years ago Dan Tenenbaum ★ 8.2k
11 results • Page 1 of 1
Recent ...
Replies
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
@[sandtrix][1] This is useful information. [1]: https://sandtrix.io
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to Hervé Pagès 16k
Teacher to dsull ▴ 40
Popular Question to bpshtiwan ▴ 10
Popular Question to Ali Barry ▴ 40
Locations • All
China, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 2 hours ago
Republic of Ireland, 5 hours ago
Germany, 5 hours ago
Traffic: 306 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6