Bioconductor Genomicdatacommons

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manifest GDCdownload GenomicDataCommons

21 months ago xiaofeiwang198266 • 0

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TCGA GenomicDataCommons GDC

written 22 months ago by António Miguel de Jesus Domingues ▴ 510

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TCGA GenomicDataCommons

updated 3.4 years ago by Robert Castelo ★ 3.4k • written 3.4 years ago by Hashirama ▴ 10

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GenomicDataCommons

3.7 years ago xiaofeiwang18266 ▴ 60

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TCGA GenomicDataCommons

4.1 years ago Ezgi ▴ 60

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GenomicDataCommons R

updated 3.7 years ago by xiaofeiwang18266 ▴ 60 • written 5.2 years ago by gv ▴ 40

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.8 years ago by Marcel Ramos 700 • written 5.8 years ago by Dario Strbenac ★ 1.6k

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genomicdatacommons tcga gdc rest http

updated 6.3 years ago by Sean Davis 21k • written 6.3 years ago by mk ▴ 20

8 results • Page 1 of 1

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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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Popular Question to sergisayolspuig ▴ 80

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k