Bioconductor GenomicInteractions

Showing : genomicInteractions • reset

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647

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InteractionSet subsetByOverlaps GenomicInteractions

16 months ago LaureTomas ▴ 10

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753

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.4 years ago koushik • 0

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1.8k

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Marco Blanchette ▴ 30

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duplicate GenomicInteractions

4.5 years ago dogancan • 0

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969

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GenomicInteractions

4.7 years ago chang.jiaming • 0

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GenomicInteractions gviz

updated 4.8 years ago by liz.ingsimmons ▴ 140 • written 4.8 years ago by Marco Blanchette ▴ 30

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930

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genomicInteractions annotation

updated 5.5 years ago by liz.ingsimmons ▴ 140 • written 5.5 years ago by ls760 • 0

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GenomicInteractions Gviz

updated 5.5 years ago by liz.ingsimmons ▴ 140 • written 5.6 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 6.0 years ago by liz.ingsimmons ▴ 140 • written 6.0 years ago by ferbecneu • 0

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1.6k

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genomicinteractions

7.2 years ago sarvesh.nikumbh ▴ 10

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2.9k

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gviz genomicinteractions

8.6 years ago enricoferrero ▴ 660

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genomicinteractions GRanges

updated 8.8 years ago by liz.ingsimmons ▴ 140 • written 8.8 years ago by tangming2005 ▴ 200

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GenomicInteractions

updated 8.9 years ago by Malcolm Perry ▴ 40 • written 8.9 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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