Bioconductor Genomestudio

Showing : genomestudio • reset

0

votes

2

replies

479

views

beadarray Illuminabeadchip GenomeStudio lumi

3 months ago • updated 12 weeks ago Liu • 0

0

votes

6

replies

3.7k

views

minfi genomestudio methylation

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by brhead ▴ 40

3

votes

14

replies

4.3k

views

GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.8 years ago by Stephanie M. Gogarten ▴ 890 • written 8.8 years ago by Lna • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Answer: normalizatino of dna methylation EPIC data

Awards • All