Bioconductor Genomeintervals

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genomeIntervals GenomicRanges

7 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

6.8 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by rubi ▴ 110

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nclist genomeintervals

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 9.4 years ago by Nicolas Delhomme ▴ 320 • written 9.6 years ago by mhz • 0

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genomeintervals

updated 9.4 years ago by Nicolas Delhomme ▴ 320 • written 9.4 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.7 years ago by Dan Tenenbaum ★ 8.2k • written 11.7 years ago by Wim Kreinen ▴ 100

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978

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Annotation convert genomeIntervals Annotation convert genomeIntervals

12.7 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 13.6 years ago by Hervé Pagès 16k • written 13.6 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

14.8 years ago Robert Castelo ★ 3.4k

10 results • Page 1 of 1

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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

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