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genomeintervals
•
reset
0
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0
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201
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals
GenomicRanges
3 months ago
gshweta95
• 0
2
votes
3
replies
1.5k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.5 years ago
rbronste
▴ 60
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
rubi
▴ 110
3
votes
2
replies
1.3k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist
genomeintervals
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
Jurat Shahidin
▴ 80
0
votes
1
reply
1.2k
views
cannot load genomeIntervals package
genomeIntervals
updated 9.0 years ago by
Nicolas Delhomme
▴ 320 • written 9.3 years ago by
mhz
• 0
1
vote
8
replies
1.7k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 9.0 years ago by
Nicolas Delhomme
▴ 320 • written 9.1 years ago by
sjackman
• 0
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.3 years ago by
Dan Tenenbaum
★ 8.2k • written 11.3 years ago by
Wim Kreinen
▴ 100
0
votes
0
replies
904
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
12.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
945
views
gff files: how to tell if right-open interval convention used?
genomeIntervals
genomeIntervals
updated 13.3 years ago by
Hervé Pagès
16k • written 13.3 years ago by
Julien Gagneur
▴ 50
0
votes
0
replies
1.1k
views
stranded findOverlaps
Sequencing
Annotation
GO
rtracklayer
IRanges
genomeIntervals
Sequencing
Annotation
GO
14.4 years ago
Robert Castelo
★ 3.3k
10 results • Page
1 of 1
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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