Bioconductor Genomeintervals

Showing : genomeintervals • reset

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genomeIntervals GenomicRanges

10 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

7.0 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by rubi ▴ 110

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nclist genomeintervals

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 9.6 years ago by Nicolas Delhomme ▴ 320 • written 9.8 years ago by mhz • 0

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genomeintervals

updated 9.6 years ago by Nicolas Delhomme ▴ 320 • written 9.6 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.9 years ago by Dan Tenenbaum ★ 8.2k • written 11.9 years ago by Wim Kreinen ▴ 100

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Annotation convert genomeIntervals Annotation convert genomeIntervals

12.9 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 13.8 years ago by Hervé Pagès 16k • written 13.8 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

15.0 years ago Robert Castelo ★ 3.4k

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Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

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