Bioconductor GenomeIntervals

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359

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genomeIntervals GenomicRanges

8 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

6.9 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by rubi ▴ 110

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nclist genomeintervals

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 9.4 years ago by Nicolas Delhomme ▴ 320 • written 9.7 years ago by mhz • 0

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genomeintervals

updated 9.4 years ago by Nicolas Delhomme ▴ 320 • written 9.4 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.7 years ago by Dan Tenenbaum ★ 8.2k • written 11.7 years ago by Wim Kreinen ▴ 100

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984

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Annotation convert genomeIntervals Annotation convert genomeIntervals

12.7 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 13.7 years ago by Hervé Pagès 16k • written 13.7 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

14.8 years ago Robert Castelo ★ 3.4k

10 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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