Showing : genomeIntervals • reset
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Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
7 months ago gshweta95 • 0
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GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
6.8 years ago rbronste ▴ 60
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1.8k
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Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 110
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What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist genomeintervals
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 80
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1.3k
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cannot load genomeIntervals package
genomeIntervals
updated 9.4 years ago by ▴ 320 • written 9.6 years ago by • 0
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1.9k
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Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 9.4 years ago by ▴ 320 • written 9.4 years ago by • 0
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2.8k
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biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by ▴ 100
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convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation convert genomeIntervals Annotation convert genomeIntervals
12.7 years ago delhomme@embl.de ★ 1.2k
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gff files: how to tell if right-open interval convention used?
genomeIntervals genomeIntervals
updated 13.6 years ago by 16k • written 13.6 years ago by ▴ 50
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stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
14.8 years ago Robert Castelo ★ 3.4k
10 results • Page 1 of 1
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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0
Thank you so much for all of your help! I really appreciate it!
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k
Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0
Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20
Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0
Any update on the resolution to this? I'm having the same issue with another species.
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
A: Does edgeR need to specify reference group?
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Commentator to James W. MacDonald 67k
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