Bioconductor Geneset

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822

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geneset GeneSetEnrichment msigdb

13 months ago Seongsu • 0

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1.8k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by manuelsokolov • 0

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3.3k

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singscore GSVA GSEA subtypes geneset

updated 4.3 years ago by Dharmesh D Bhuva • 0 • written 6.1 years ago by Pietro ▴ 40

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1.3k

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GSVA geneset RNASeq TCGA subtypes

6.3 years ago Pietro ▴ 40

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2.4k

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kegg geneset genelist gage package

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by sup230 ▴ 30

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1.9k

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gseabase geneset

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.3 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

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A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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