Bioconductor Geneset

Showing : geneset • reset

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691

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geneset GeneSetEnrichment msigdb

10 months ago Seongsu • 0

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1.6k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by manuelsokolov • 0

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3.1k

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singscore GSVA GSEA subtypes geneset

updated 4.1 years ago by Dharmesh D Bhuva • 0 • written 6.0 years ago by Pietro ▴ 40

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1.3k

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GSVA geneset RNASeq TCGA subtypes

6.1 years ago Pietro ▴ 40

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2.2k

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kegg geneset genelist gage package

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by sup230 ▴ 30

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1.8k

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gseabase geneset

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.2 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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