Showing : geneset • reset
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
8 months ago Seongsu • 0
0
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1
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1.5k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 17 months ago by 67k • written 17 months ago by • 0
2
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4
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3.0k
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Are singscore scores comparable between gene sets?
singscore GSVA GSEA subtypes geneset
updated 4.0 years ago by • 0 • written 5.8 years ago by ▴ 40
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1.2k
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA geneset RNASeq TCGA subtypes
6.0 years ago Pietro ▴ 40
2
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4
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2.1k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.4 years ago by 52k • written 7.4 years ago by ▴ 30
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2
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1.7k
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Question on GeneSetCollection in GSEABase
gseabase geneset
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
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1.6k
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Problems in building Cummerbundcuff Database
cummerbund readcufflinks geneset
9.0 years ago alessio.stevano • 0
7 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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Scholar to James W. MacDonald 67k
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