Showing : geneplotter • reset
6
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Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 10
0
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1
reply
2.0k
views
install geneplotter
geneplotter geneplotter
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
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0
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1.9k
views
library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
11.9 years ago Guest User ★ 13k
0
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0
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1.2k
views
geneplotter - buildChromLoc for arrays with no .db
GO geneplotter GO geneplotter
12.3 years ago Lavinia Gordon ▴ 480
0
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1
reply
1.3k
views
geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 480
0
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13
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2.8k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 30
0
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1
reply
1.5k
views
Error installing geneplotter
geneplotter geneplotter
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ★ 13k
0
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1
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1.5k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 10
0
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3
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2.3k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP geneplotter SNPchip SNP geneplotter SNPchip
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 40
0
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0
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2.6k
views
How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
15.9 years ago Martin Morgan 25k
0
votes
5
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2.0k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 160
0
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0
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1.1k
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
16.0 years ago michael watson IAH-C ★ 3.4k
0
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5
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3.5k
views
From eSet to AffyBatch Object
geneplotter affy geneplotter affy
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 120
0
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3
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1.5k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 16.8 years ago by ▴ 730 • written 16.8 years ago by ▴ 110
0
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0
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1.1k
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
16.9 years ago Heidi Dvinge ★ 2.0k
0
votes
0
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894
views
buildChromLocation with Drosophila2 Affy arrays
geneplotter geneplotter
17.0 years ago Blanchette, Marco ▴ 10
0
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2
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1.4k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 17.4 years ago by ▴ 540 • written 17.4 years ago by ★ 1.6k
0
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4
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2.5k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 270
0
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1
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1.3k
views
Rgraphviz edge attributes can't be changed on Mac
geneplotter Rgraphviz geneplotter Rgraphviz
updated 17.4 years ago by 16k • written 17.4 years ago by ★ 1.6k
0
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1
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1.6k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 10
0
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2
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1.4k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 17.5 years ago by ★ 13k • written 17.5 years ago by ▴ 70
0
votes
1
reply
1.3k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 70
0
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4
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2.4k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 17.6 years ago by ▴ 500 • written 17.6 years ago by ★ 1.4k
0
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6
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3.8k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 17.6 years ago by ▴ 220 • written 17.6 years ago by ★ 2.2k
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0
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2.1k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
17.6 years ago Min Wook Kim ▴ 20
0
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2
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1.4k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 17.6 years ago by ★ 7.2k • written 17.6 years ago by ▴ 30
0
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1
reply
1.4k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.7 years ago by ▴ 320 • written 17.7 years ago by ▴ 270
0
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1
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1.6k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.7 years ago by ▴ 320 • written 17.7 years ago by ▴ 410
0
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3
replies
1.8k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.7 years ago by ▴ 40 • written 17.7 years ago by ▴ 270
0
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1
reply
1.5k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
17.8 years ago Steven McKinney ▴ 310
0
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1
reply
1.4k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 17.8 years ago by ▴ 460 • written 17.8 years ago by ▴ 10
0
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3
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1.4k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 160
0
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4
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2.6k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 17.9 years ago by ★ 1.9k • written 17.9 years ago by ▴ 250
0
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0
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1.3k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.0 years ago stephen edwards ▴ 10
0
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2
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1.9k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 18.0 years ago by 52k • written 18.0 years ago by ▴ 680
0
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1
reply
1.6k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.0 years ago by 68k • written 18.0 years ago by ★ 2.2k
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0
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1.8k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
18.1 years ago Tarca, Adi ▴ 570
0
votes
1
reply
996
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ★ 1.3k
0
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1
reply
1.2k
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ★ 1.3k
0
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4
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2.0k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ★ 6.5k
0
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10
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2.3k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 18.3 years ago by ▴ 460 • written 18.4 years ago by ▴ 70
0
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12
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2.4k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 18.4 years ago by ★ 5.5k • written 18.4 years ago by ▴ 460
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0
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1.5k
views
Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.9 years ago Palmer, Lance ▴ 30
0
votes
1
reply
1.1k
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.9 years ago by 21k • written 19.9 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
20.0 years ago Yi, Andrew ▴ 20
0
votes
2
replies
1.6k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 20.0 years ago by ★ 13k • written 20.1 years ago by ▴ 540
0
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2
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1.1k
views
greenred.colors() in geneplotter
geneplotter geneplotter
20.1 years ago michael watson IAH-C ★ 3.4k
0
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0
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978
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
20.2 years ago John Zhang ★ 2.9k
0
votes
2
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1.9k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 20.4 years ago by ▴ 680 • written 20.4 years ago by ▴ 10
0
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2
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1.5k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 130
50 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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