Bioconductor Genemeta

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415

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GeneMeta generegulation

2.2 years ago Marcus • 0

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1.9k

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preprocessing microarray genemeta

updated 8.1 years ago by alexvpickering ▴ 110 • written 8.1 years ago by Lian Liu ▴ 20

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RankProd GeneMeta metaArray RankProd GeneMeta metaArray

13.3 years ago boczniak767 ▴ 740

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GeneMeta GeneMeta

14.1 years ago Seungwoo Hwang ▴ 80

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1.2k

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Microarray limma GeneMeta Microarray limma GeneMeta

14.6 years ago Paul Leo ▴ 970

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rae230a affy GeneMeta rae230a affy GeneMeta

updated 18.5 years ago by Darlene Goldstein ▴ 230 • written 18.5 years ago by Sharon Anbu ▴ 480

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GeneMeta GeneMeta

19.4 years ago ivan.borozan@utoronto.ca ▴ 80

7 results • Page 1 of 1

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Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

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Answer: ANOVA like approach of edgeR

Answer: biomaRt has encountered an unknown server error while using getLDS

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome

Answer: Epic v2 Annotation CpG_maf source?

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Teacher to Gordon Smyth 52k

Popular Question to Hans-Ulrich Klein ▴ 330