Bioconductor Gene set testing

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mroast camera gene set testing

4.1 years ago svlachavas ▴ 830

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limma camera gene set testing ensembl

updated 4.9 years ago by Robert Castelo ★ 3.4k • written 4.9 years ago by Jeremy Beales ▴ 10

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limma agilent microarrays mroast fry gene tests gene set testing

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by svlachavas ▴ 830

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limma camera cameraPR edgeR gene set testing

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by jamie.gearing ▴ 60

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6.2 years ago Andrea Carenzo • 0

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updated 6 months ago by Chris ▴ 20 • written 7.8 years ago by Pekka Kohonen ▴ 190

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7.8 years ago Bouzid.a ▴ 20

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8.0 years ago Jon Bråte ▴ 260

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updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by le2336 ▴ 20

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8.5 years ago m.fletcher ▴ 20

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limma camera gene set testing

8.5 years ago claire.n.levy ▴ 10

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updated 8.9 years ago by Gordon Smyth 51k • written 8.9 years ago by svlachavas ▴ 830

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gene set testing roast mroast differential gene expression bioconductor

9.5 years ago svlachavas ▴ 830

14 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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