Bioconductor Gene set testing

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mroast camera gene set testing

4.1 years ago svlachavas ▴ 830

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limma camera gene set testing ensembl

updated 4.9 years ago by Robert Castelo ★ 3.4k • written 4.9 years ago by Jeremy Beales ▴ 10

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limma agilent microarrays mroast fry gene tests gene set testing

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by svlachavas ▴ 830

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limma camera cameraPR edgeR gene set testing

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by jamie.gearing ▴ 60

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limma roast statistics source code gene set testing

6.3 years ago • updated 6.2 years ago Andrea Carenzo • 0

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gage gene set testing

updated 6.5 years ago by Luo Weijun ★ 1.6k • written 6.5 years ago by Aurora ▴ 20

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EGSEA gene set testing vooma limma voom gsea

updated 6 months ago by Chris ▴ 20 • written 7.9 years ago by Pekka Kohonen ▴ 190

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limma agilent microarrays gene set testing annotation

7.8 years ago Bouzid.a ▴ 20

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R DESeq2 gene set testing gene expression

8.0 years ago Jon Bråte ▴ 260

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gene set testing camera edger

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by le2336 ▴ 20

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gsea ncrna coexpression gene set analysis gene set testing

8.6 years ago m.fletcher ▴ 20

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limma camera gene set testing

8.6 years ago claire.n.levy ▴ 10

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limma mroast barcodeplot KEGG gene set testing

updated 9.0 years ago by Gordon Smyth 51k • written 9.0 years ago by svlachavas ▴ 830

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gene set testing roast mroast differential gene expression bioconductor

9.5 years ago svlachavas ▴ 830

14 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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