Bioconductor Gene set testing

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790

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mroast camera gene set testing

4.4 years ago svlachavas ▴ 840

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2.7k

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limma camera gene set testing ensembl

updated 5.2 years ago by Robert Castelo ★ 3.4k • written 5.2 years ago by Jeremy Beales ▴ 10

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1.6k

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limma agilent microarrays mroast fry gene tests gene set testing

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by svlachavas ▴ 840

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1.7k

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limma camera cameraPR edgeR gene set testing

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by jamie.gearing ▴ 60

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1.5k

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limma roast statistics source code gene set testing

6.5 years ago Andrea Carenzo • 0

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1.6k

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gage gene set testing

updated 6.7 years ago by Luo Weijun ★ 1.6k • written 6.8 years ago by Aurora ▴ 20

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2.0k

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EGSEA gene set testing vooma limma voom gsea

updated 9 months ago by Chris ▴ 20 • written 8.1 years ago by Pekka Kohonen ▴ 190

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2.2k

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limma agilent microarrays gene set testing annotation

8.1 years ago Bouzid.a ▴ 20

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2.8k

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R DESeq2 gene set testing gene expression

8.3 years ago Jon Bråte ▴ 260

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1.9k

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gene set testing camera edger

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by le2336 ▴ 20

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1.6k

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gsea ncrna coexpression gene set analysis gene set testing

8.8 years ago m.fletcher ▴ 20

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2.3k

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limma camera gene set testing

8.8 years ago claire.n.levy ▴ 10

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3.5k

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limma mroast barcodeplot KEGG gene set testing

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by svlachavas ▴ 840

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2.1k

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gene set testing roast mroast differential gene expression bioconductor

9.8 years ago svlachavas ▴ 840

14 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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