Bioconductor Gene set enrichment

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gsva plage differential expression gene set enrichment

5.8 years ago krassowski.michal ▴ 40

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1.7k

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camera limma gene set analysis gene set enrichment

updated 6.0 years ago by Gordon Smyth 51k • written 6.0 years ago by emeline.perthame • 0

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1.2k

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gene set analysis gene set enrichment limma

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by jaynishshah • 0

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1.3k

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gene set enrichment KEGG

updated 6.7 years ago by Lluís Revilla Sancho ▴ 760 • written 6.7 years ago by RMRG ▴ 10

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2.1k

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limma edger barcodeplot gene set enrichment mroast

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by srmaruyama • 0

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3.4k

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limma goana gene set enrichment

7.0 years ago emy_66 • 0

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3.9k

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 7.0 years ago by Guangchuang Yu ★ 1.2k • written 7.0 years ago by kirannbishwa01 ▴ 20

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1.4k

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gene ontology go analysis gene set enrichment gene set analysis News

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by triZZla • 0

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2.7k

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limma camera gene set analysis gene set enrichment

updated 7.7 years ago by Gordon Smyth 51k • written 7.7 years ago by natalia.pietrosemoli • 0

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2.8k

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 7.8 years ago by Lluís Revilla Sancho ▴ 760 • written 8.1 years ago by fromhj304 ▴ 10

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2.5k

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 8.1 years ago by Guangchuang Yu ★ 1.2k • written 8.1 years ago by fromhj304 ▴ 10

11 results • Page 1 of 1

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…

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A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30