Showing : gene set analysis • reset
0
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1.9k
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Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
1
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2
replies
1.3k
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Visualise gene set analysis plot
gene set analysis gene set enrichment limma
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
1
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2
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1.5k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.8 years ago atakanekiz ▴ 30
18
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3
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4.0k
views
cameraPR vs geneSetTest and ROAST/CAMERA in general
limma voomwithqualityweights gene set analysis
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 80
1
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3
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1.6k
views
Clustering of samples based on specific gene sets
microarray differential gene expression gene set analysis clustering
7.1 years ago cherlyn.t • 0
2
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3
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4.0k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 7.7 years ago by ▴ 20 • written 10.3 years ago by • 0
0
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1
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1.5k
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News: Interested in developing a new gene set enrichment tool ?
gene ontology go analysis gene set enrichment gene set analysis News
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
0
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7
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2.9k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.2 years ago by 52k • written 8.2 years ago by • 0
0
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0
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1.4k
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Yeast ORF gene set analysis with globaltest (gtKEGG)
globaltest saccharomyces cerevisiae gtKEGG KEGG gene set analysis
8.8 years ago Rebecca Ong • 0
2
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2
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1.5k
views
Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
0
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2
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1.3k
views
Constellation Map from the Broad?
gene set analysis
8.9 years ago Aedin Culhane ▴ 510
1
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0
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1.7k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea ncrna coexpression gene set analysis gene set testing
9.0 years ago m.fletcher ▴ 20
1
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3
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2.0k
views
Discrepancy in gene set size between gage() and geneData()
gage gene set analysis pathview kegg pathway analysis
9.2 years ago serpalma.v ▴ 60
0
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1
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2.0k
views
Gene Set Enrichment Analysis with topGO
topGO gene set analysis
updated 9.4 years ago by 68k • written 9.4 years ago by ▴ 40
3
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3
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8.6k
views
Gene Set Enrichment Analysis with Limma
limma romer gene set analysis
updated 9.4 years ago by 52k • written 9.4 years ago by ▴ 40
4
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6
replies
9.4k
views
How to carry out a gene set analysis using custom gene sets?
gene set analysis
updated 9.6 years ago by 52k • written 9.6 years ago by ▴ 360
2
votes
2
replies
2.9k
views
barcode plot function in limma
limma barcodeplot gene set analysis
updated 9.9 years ago by 52k • written 9.9 years ago by ▴ 10
2
votes
2
replies
1.9k
views
UCSC Genome, match accession (NM_#####) with actual gene name
ucsc gene set analysis genome annotation
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
3
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4
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5.7k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 10.0 years ago by 52k • written 10.5 years ago by • 0
1
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2
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1.6k
views
Gene set analysis with CAMERA with interaction effect
gene set analysis
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
0
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2
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1.6k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.3 years ago by 52k • written 10.3 years ago by • 0
21 results • Page 1 of 1
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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