Showing : gene set analysis • reset
0
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2
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1.9k
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Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.4 years ago by 52k • written 6.4 years ago by • 0
1
vote
2
replies
1.3k
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Visualise gene set analysis plot
gene set analysis gene set enrichment limma
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
1
vote
2
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1.5k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.7 years ago atakanekiz ▴ 30
18
votes
3
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3.9k
views
cameraPR vs geneSetTest and ROAST/CAMERA in general
limma voomwithqualityweights gene set analysis
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 80
1
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3
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1.6k
views
Clustering of samples based on specific gene sets
microarray differential gene expression gene set analysis clustering
7.1 years ago cherlyn.t • 0
2
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3
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4.0k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 7.6 years ago by ▴ 20 • written 10.2 years ago by • 0
0
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1
reply
1.4k
views
News: Interested in developing a new gene set enrichment tool ?
gene ontology go analysis gene set enrichment gene set analysis News
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
0
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7
replies
2.9k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.1 years ago by 52k • written 8.2 years ago by • 0
0
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0
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1.4k
views
Yeast ORF gene set analysis with globaltest (gtKEGG)
globaltest saccharomyces cerevisiae gtKEGG KEGG gene set analysis
8.7 years ago Rebecca Ong • 0
2
votes
2
replies
1.4k
views
Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
0
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2
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1.3k
views
Constellation Map from the Broad?
gene set analysis
8.8 years ago Aedin Culhane ▴ 510
1
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0
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1.6k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea ncrna coexpression gene set analysis gene set testing
9.0 years ago m.fletcher ▴ 20
1
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3
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2.0k
views
Discrepancy in gene set size between gage() and geneData()
gage gene set analysis pathview kegg pathway analysis
9.1 years ago serpalma.v ▴ 60
0
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1
reply
2.0k
views
Gene Set Enrichment Analysis with topGO
topGO gene set analysis
updated 9.4 years ago by 68k • written 9.4 years ago by ▴ 40
3
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3
replies
8.6k
views
Gene Set Enrichment Analysis with Limma
limma romer gene set analysis
updated 9.4 years ago by 52k • written 9.4 years ago by ▴ 40
4
votes
6
replies
9.3k
views
How to carry out a gene set analysis using custom gene sets?
gene set analysis
updated 9.6 years ago by 52k • written 9.6 years ago by ▴ 360
2
votes
2
replies
2.9k
views
barcode plot function in limma
limma barcodeplot gene set analysis
updated 9.9 years ago by 52k • written 9.9 years ago by ▴ 10
2
votes
2
replies
1.9k
views
UCSC Genome, match accession (NM_#####) with actual gene name
ucsc gene set analysis genome annotation
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
3
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4
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5.7k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 10.0 years ago by 52k • written 10.5 years ago by • 0
1
vote
2
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1.6k
views
Gene set analysis with CAMERA with interaction effect
gene set analysis
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
0
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2
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1.5k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.2 years ago by 52k • written 10.2 years ago by • 0
21 results • Page 1 of 1
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30
Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0
Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0
I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
Votes
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Answer: SingleR with multiple single cell references
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