Showing : gene expression data • reset
2
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Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
limma lumi illumina gene expression data
updated 3.0 years ago by ▴ 10 • written 6.5 years ago by • 0
4
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5
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1.6k
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fRMA results different for Windows and Linux
frma expr gene expression data affy
updated 6.6 years ago by 67k • written 6.6 years ago by • 0
0
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0
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Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
gene expression gene expression data cel affy affymatrix
6.9 years ago torgeirous • 0
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Job: Job: Computational Biologists - Expanding the impact of genomic data on drug development (Immuneering Corporation, Cambridge MA and New York NY)
rna-seq computational biology cns disease gene expression data neurodegeneration Job
7.3 years ago mmartin ▴ 20
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Possible(validated) methodology implemented in R for integrating and analyzing clinical data with gene expression data in R
data integration clinicaldata gene expression data PET
9.3 years ago svlachavas ▴ 840
5 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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