Bioconductor Genbankr

Showing : genbankr • reset

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585

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genbankr

3.3 years ago Lauren • 0

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2.1k

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genbankr

updated 4.2 years ago by Nicholas Cooley • 0 • written 4.2 years ago by heiko_kin ▴ 60

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1.6k

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granges genomic ranges genbankr ensembldb

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by biomiha ▴ 20

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836

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genbankr parsing

4.8 years ago sean.c.m.booth • 0

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793

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genbankr

5.5 years ago jeyp • 0

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1.0k

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genbankr parseGenBank gbk error

5.6 years ago ashley.dederich • 0

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993

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genbankr genbank annotation

6.5 years ago story.benjamin ▴ 20

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1.2k

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genbankr

updated 6.9 years ago by becker.gabriel ▴ 10 • written 7.2 years ago by Monther Alhamdoosh ▴ 40

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1.2k

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genbankr

updated 6.9 years ago by becker.gabriel ▴ 10 • written 7.1 years ago by inookaew • 0

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1.6k

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genbankr

updated 8.2 years ago by becker.gabriel ▴ 10 • written 8.2 years ago by Thomas Sandmann ▴ 90

10 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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