Bioconductor Gdcprepare

Showing : gdcprepare • reset

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GDCPrepare GDCDownload

2.6 years ago Manav • 0

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1.8k

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tcgabiolinks gdcprepare differential expression

5.5 years ago fawazfebin ▴ 60

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TCGABiolinks GDCprepare

5.7 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 5.7 years ago by Tiago C. Silva ▴ 270 • written 5.7 years ago by Talip ▴ 10

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TCGA GDCprepare

6.2 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

7.3 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 7.8 years ago by Dario Strbenac ★ 1.6k • written 7.8 years ago by newbie • 0

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R tcgabiolinks gdcprepare

7.9 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.0 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.2 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

8.5 years ago sabarinath.chandrasekharan ▴ 10

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1.4k

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tcgabiolinks gdcprepare

updated 8.6 years ago by Tiago C. Silva ▴ 270 • written 8.6 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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