Bioconductor Gdcprepare

Showing : gdcprepare • reset

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965

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GDCPrepare GDCDownload

2.2 years ago Manav • 0

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1.6k

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tcgabiolinks gdcprepare differential expression

5.1 years ago fawazfebin ▴ 60

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2.9k

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TCGABiolinks GDCprepare

5.3 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 5.3 years ago by Tiago C. Silva ▴ 270 • written 5.3 years ago by Talip Zengin ▴ 10

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TCGA GDCprepare

5.8 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by ansari.sarabio • 0

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973

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tcgabiolinks illegaloperation gdcprepare

6.9 years ago lisa8191 • 0

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1.8k

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 7.4 years ago by Dario Strbenac ★ 1.5k • written 7.4 years ago by newbie • 0

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R tcgabiolinks gdcprepare

7.5 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.6 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.8 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

8.1 years ago sabarinath.chandrasekharan ▴ 10

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1.3k

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tcgabiolinks gdcprepare

updated 8.2 years ago by Tiago C. Silva ▴ 270 • written 8.2 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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