Bioconductor Gdcprepare

Showing : gdcprepare • reset

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GDCPrepare GDCDownload

2.3 years ago Manav • 0

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1.7k

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tcgabiolinks gdcprepare differential expression

5.2 years ago fawazfebin ▴ 60

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TCGABiolinks GDCprepare

5.4 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 5.5 years ago by Tiago C. Silva ▴ 270 • written 5.5 years ago by Talip ▴ 10

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TCGA GDCprepare

5.9 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

7.0 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 7.5 years ago by Dario Strbenac ★ 1.5k • written 7.5 years ago by newbie • 0

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R tcgabiolinks gdcprepare

7.6 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.7 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.9 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

8.2 years ago sabarinath.chandrasekharan ▴ 10

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1.3k

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tcgabiolinks gdcprepare

updated 8.3 years ago by Tiago C. Silva ▴ 270 • written 8.3 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

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Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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