Bioconductor Gdcdownload

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manifest GDCdownload GenomicDataCommons

16 months ago xiaofeiwang198266 • 0

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991

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GDCPrepare GDCDownload

2.2 years ago Manav • 0

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bioconductor GDCdownload

4.7 years ago sann • 0

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gdc data TCGA gdcdownload

5.9 years ago coyoung ▴ 10

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tcgabiolinks gdcdownload tcga-brca

6.9 years ago fawazfebin ▴ 60

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2.4k

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tcgabiolinks gdcdownload unzip

updated 6.9 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.9 years ago by fawazfebin ▴ 60

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Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

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Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M

Answer: ANOVA like approach of edgeR

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Scholar to Gordon Smyth 52k

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Hans-Ulrich Klein ▴ 330