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gdc data
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r: vector memory exhausted (limit reached?)
TCGAbiolinks
Methylation
GDC data
Data prepare
4.5 years ago
ph.shimaasherif
• 0
0
votes
0
replies
982
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GDC RNA seq files (replicates?)
gdc data
TCGA
gdcdownload
5.5 years ago
coyoung
▴ 10
17
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8
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3.3k
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How to check the read length for all the TCGA data samples in GDC?
gdc
tcga
wes
gdc data
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
Biologist
▴ 110
0
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0
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851
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Error in GDCprepare of TCGAbioloinks
TCGAbioloinks
GDC data
6.3 years ago
lawarde.ankita1
▴ 30
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Answer: Ranking the GSEA Results
by
Michael Love
42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Gordon Smyth
51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
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Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
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