Bioconductor Gcmapweb

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rnaseq drugvsdisease gcmap gcmapweb

updated 7.9 years ago by saezrodriguez • 0 • written 7.9 years ago by bioinformatics ▴ 20

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gCMAP gCMAPWeb

9.9 years ago afshinmh • 0

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gCMAPWeb gCMAPWeb

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by array chip ▴ 420

3 results • Page 1 of 1

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Answer: DNAStringSet(x, start=, end=) loses quality information by stenlana035 • 0

Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…

Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

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Limma outputs different results for same sample?

Comment: DESeq - help with pair wise comparisons

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