Bioconductor Gcmap

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microarray cmap package gCMAP gCAMPWeb

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by bastien.chassagnol • 0

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rnaseq drugvsdisease gcmap gcmapweb

updated 7.8 years ago by saezrodriguez • 0 • written 7.8 years ago by bioinformatics ▴ 20

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gCMAP gCMAPWeb

9.8 years ago afshinmh • 0

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gCMAP gCMAP

updated 11.7 years ago by Dan Tenenbaum ★ 8.2k • written 11.7 years ago by Christopher Howerton ▴ 40

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This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

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