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gage package
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0
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1.0k
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GAGE for non model organism
gage package
gage
6.3 years ago
melkile26
• 0
1
vote
2
replies
1.3k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.3 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.0k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
3.9k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.7 years ago by
Helen
• 0 • written 6.7 years ago by
tarun2
• 0
2
votes
4
replies
2.1k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 7.2 years ago by
Gordon Smyth
51k • written 7.2 years ago by
sup230
▴ 30
1
vote
0
replies
1.6k
views
DESeq2 - GAGE workflow
gage package
deseq2
7.3 years ago
sup230
▴ 30
0
votes
2
replies
1.8k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 8.0 years ago by
Luo Weijun
★ 1.6k • written 8.1 years ago by
Michael
• 0
1
vote
2
replies
1.6k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
8.2 years ago
joanito.liberti
• 0
0
votes
1
reply
1.1k
views
Question on Gage
gage package
path.ids
RNA-Seq
8.3 years ago
rl1385
• 0
0
votes
0
replies
1.0k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.3 years ago
smt8n
• 0
10 results • Page
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Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards
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Gordon Smyth
51k
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.1k
Supporter
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Paul Harrison
▴ 100
Popular Question
to
Mikhail Dozmorov
▴ 30
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