Bioconductor Gage package

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gage package gage

6.7 years ago melkile26 • 0

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gage gage package gene expression matrix gene set analysis

6.7 years ago atakanekiz ▴ 30

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3.2k

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gage package error

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Miskey, Csaba ▴ 20

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gage gage package pathview rna-seq

updated 3.1 years ago by Helen • 0 • written 7.1 years ago by tarun2 • 0

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kegg geneset genelist gage package

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by sup230 ▴ 30

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gage package deseq2

7.7 years ago sup230 ▴ 30

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gage gage package

updated 8.4 years ago by Luo Weijun ★ 1.6k • written 8.5 years ago by Michael • 0

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R gage package rnaseq pathview

8.7 years ago joanito.liberti • 0

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gage package path.ids RNA-Seq

8.7 years ago rl1385 • 0

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

8.8 years ago smt8n • 0

10 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170