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gage package
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GAGE for non model organism
gage package
gage
6.3 years ago
melkile26
• 0
1
vote
2
replies
1.3k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.4 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.0k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
4.0k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.7 years ago by
Helen
• 0 • written 6.8 years ago by
tarun2
• 0
2
votes
4
replies
2.1k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 7.3 years ago by
Gordon Smyth
51k • written 7.3 years ago by
sup230
▴ 30
1
vote
0
replies
1.6k
views
DESeq2 - GAGE workflow
gage package
deseq2
7.3 years ago
sup230
▴ 30
0
votes
2
replies
1.8k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 8.0 years ago by
Luo Weijun
★ 1.6k • written 8.1 years ago by
Michael
• 0
1
vote
2
replies
1.6k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
8.3 years ago
joanito.liberti
• 0
0
votes
1
reply
1.1k
views
Question on Gage
gage package
path.ids
RNA-Seq
8.3 years ago
rl1385
• 0
0
votes
0
replies
1.0k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.4 years ago
smt8n
• 0
10 results • Page
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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