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gage package
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926
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GAGE for non model organism
gage package
gage
5.9 years ago
melkile26
• 0
1
vote
2
replies
1.2k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.0 years ago
atakanekiz
▴ 30
5
votes
7
replies
2.8k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
3.7k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.3 years ago by
Helen
• 0 • written 6.4 years ago by
tarun2
• 0
2
votes
4
replies
1.8k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 6.9 years ago by
Gordon Smyth
51k • written 6.9 years ago by
sup230
▴ 30
1
vote
0
replies
1.5k
views
DESeq2 - GAGE workflow
gage package
deseq2
6.9 years ago
sup230
▴ 30
0
votes
2
replies
1.6k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 7.7 years ago by
Luo Weijun
★ 1.6k • written 7.7 years ago by
Michael
• 0
1
vote
2
replies
1.5k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
7.9 years ago
joanito.liberti
• 0
0
votes
1
reply
965
views
Question on Gage
gage package
path.ids
RNA-Seq
7.9 years ago
rl1385
• 0
0
votes
0
replies
940
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.0 years ago
smt8n
• 0
10 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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