Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

16 months ago Sabiha ▴ 20

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FoldChange DiffBind lfcShrink

updated 21 months ago by Rory Stark ★ 5.2k • written 21 months ago by bhandary.8590 ▴ 20

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FoldChange DiffBind lfcShrink Cut&TagData

22 months ago bhandary.8590 ▴ 20

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DESeq2 TPM Foldchange

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.3 years ago by Gordon Smyth 52k • written 3.3 years ago by johndavidgriner74 • 0

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sign FoldChange DESeq2 reference

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by yampolsk • 0

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DifferentialExpression DEA FC FoldChange edgeR

3.6 years ago zhxiaokang ▴ 20

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EdgeR RNAseq Foldchange

updated 3.8 years ago by swbarnes2 ★ 1.4k • written 3.8 years ago by najib • 0

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foldchange topGO DifferentialExpression enrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by lessismore ▴ 20

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limma microarray foldchange DEG GEO

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by Pietro ▴ 40

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.0 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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limma RNAseq foldchange

6.2 years ago • updated 6.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k