Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

13 months ago Sabiha ▴ 20

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4.7k

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FoldChange DiffBind lfcShrink

updated 18 months ago by Rory Stark ★ 5.2k • written 18 months ago by bhandary.8590 ▴ 20

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1.3k

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FoldChange DiffBind lfcShrink Cut&TagData

19 months ago bhandary.8590 ▴ 20

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2.0k

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DESeq2 TPM Foldchange

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by dadca596 • 0

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1.1k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.1 years ago by Gordon Smyth 52k • written 3.1 years ago by johndavidgriner74 • 0

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1.5k

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sign FoldChange DESeq2 reference

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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6.5k

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DifferentialExpression DEA FC FoldChange edgeR

3.4 years ago zhxiaokang ▴ 20

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2.9k

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EdgeR RNAseq Foldchange

updated 3.6 years ago by swbarnes2 ★ 1.4k • written 3.6 years ago by najib • 0

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3.4k

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foldchange topGO DifferentialExpression enrichment

updated 4.2 years ago by Gordon Smyth 52k • written 4.2 years ago by lessismore ▴ 20

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1.7k

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limma microarray foldchange DEG GEO

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by Pietro ▴ 40

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.8 years ago by Michael Love 43k • written 6.1 years ago by fiona.dick91 ▴ 60

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1.6k

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limma RNAseq foldchange

5.9 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k