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foldchange
•
reset
1
vote
2
replies
992
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
15 months ago
Sabiha
▴ 20
1
vote
1
reply
4.9k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 20 months ago by
Rory Stark
★ 5.2k • written 21 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.4k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
21 months ago
bhandary.8590
▴ 20
0
votes
2
replies
2.1k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
dadca596
• 0
0
votes
1
reply
1.2k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.2 years ago by
Gordon Smyth
52k • written 3.2 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.5k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
yampolsk
• 0
3
votes
5
replies
6.9k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
3.6 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.0k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.7 years ago by
swbarnes2
★ 1.4k • written 3.8 years ago by
najib
• 0
0
votes
7
replies
3.9k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.4 years ago by
Gordon Smyth
52k • written 4.4 years ago by
lessismore
▴ 20
4
votes
5
replies
1.8k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.1 years ago by
Gordon Smyth
52k • written 5.2 years ago by
Pietro
▴ 40
1
vote
1
reply
1.6k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.9 years ago by
Michael Love
43k • written 6.2 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.7k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.1 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage
by
Albert
• 0
great and very nice
Comment: European Bioconductor Conference 2023 planning
by
Pandora
• 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions
by
bukarimanches
• 0
I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
Morse
• 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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Michael Love
43k
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Rob
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shepherl
4.1k
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