Bioconductor Fold change

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R deseq2 edger differential gene expression fold change

updated 2.9 years ago by ATpoint ★ 4.8k • written 6.8 years ago by Beginner ▴ 60

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diffBind Fold Change

updated 3.9 years ago by Joe Nicholas • 0 • written 6.2 years ago by joseluis.ruiz • 0

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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ballgown stattest fold change

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Arindam ▴ 80

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logfc limma fold change

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Claudia ▴ 10

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edgeR DE analysis fold change cpm

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sara ▴ 20

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…

Comment: fast apply on RleList by story.benjamin ▴ 20

Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…

Answer: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …

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Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Limma outputs different results for same sample?

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Popular Question to story.benjamin ▴ 20