Bioconductor Fold change

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5.9k

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R deseq2 edger differential gene expression fold change

updated 2.8 years ago by ATpoint ★ 4.6k • written 6.6 years ago by Beginner ▴ 60

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2.7k

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diffBind Fold Change

updated 3.8 years ago by Joe Nicholas • 0 • written 6.1 years ago by joseluis.ruiz • 0

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1.6k

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edger differential expression genes fold change

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by ilovesuperheroes1993 • 0

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1.1k

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mfuzz fold change log2 STANDARDISATION

6.6 years ago prakashpandey1111 • 0

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1.6k

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ballgown stattest fold change

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by Claudia ▴ 10

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2.8k

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edgeR DE analysis fold change cpm

updated 8.5 years ago by Ryan C. Thompson ★ 7.9k • written 8.5 years ago by Sara ▴ 20

7 results • Page 1 of 1

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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0

Oh, that's silly - thanks, will do!

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

Votes

Comment: Unused arguments error without used arguments in GSVA?

Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to Michael Love 43k

Popular Question to Malcolm Cook ★ 1.6k