Bioconductor Fold change

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R deseq2 edger differential gene expression fold change

updated 3.0 years ago by ATpoint ★ 4.8k • written 6.8 years ago by Beginner ▴ 60

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diffBind Fold Change

updated 4.0 years ago by Joe Nicholas • 0 • written 6.3 years ago by joseluis.ruiz • 0

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.9 years ago by ilovesuperheroes1993 • 0

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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ballgown stattest fold change

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Arindam ▴ 80

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logfc limma fold change

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by Claudia ▴ 10

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edgeR DE analysis fold change cpm

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sara ▴ 20

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10