Showing : fold change • reset
5
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 2.6 years ago by ★ 4.6k • written 6.5 years ago by ▴ 60
1
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2
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2.6k
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diffBind report Fold scale
diffBind Fold Change
updated 3.6 years ago by • 0 • written 5.9 years ago by • 0
2
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4
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1.6k
views
Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 5.5 years ago by ★ 28k • written 5.5 years ago by • 0
0
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0
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1.1k
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
6.5 years ago prakashpandey1111 • 0
1
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1
reply
1.6k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 6.8 years ago by 67k • written 6.8 years ago by ▴ 80
0
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1
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1.7k
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Question on fold change calculation for microarray data
logfc limma fold change
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 10
2
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7
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2.7k
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About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 8.4 years ago by ★ 7.9k • written 8.4 years ago by ▴ 20
7 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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