Bioconductor Fluidigm

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686

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limma Limma Fluidigm

updated 20 months ago by Gordon Smyth 51k • written 20 months ago by jms2520 ▴ 10

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1.2k

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DESeq2 scRNAseq Fluidigm

2.1 years ago evocanres • 0

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1.0k

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htqpcr bioconductor fluidigm biomark

6.7 years ago reed27 • 0

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953

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htqpcr fluidigm

6.8 years ago rhonce • 0

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1.2k

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fluidigm normalization limma pcr

updated 7.9 years ago by Gordon Smyth 51k • written 7.9 years ago by raf4 ▴ 30

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1.4k

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fluidigm wilcoxon signed rank test t.test adj.p.value normal distribution

updated 8.6 years ago by Gordon Smyth 51k • written 8.6 years ago by dk364 • 0

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Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

Yes. Samples in columns and genes in rows.

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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