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flowcore
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159
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore
FlowCytometry
FlowCytometryData
3 months ago
vpochic
• 0
0
votes
0
replies
481
views
How to fix fix $PnR in flowCore
flowCore
updated 10 months ago by
James W. MacDonald
68k • written 11 months ago by
Elle
• 0
1
vote
1
reply
698
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 13 months ago by
SamGG
▴ 360 • written 14 months ago by
jarod
▴ 30
0
votes
0
replies
618
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity
flowCore
15 months ago
info
▴ 10
0
votes
6
replies
1.8k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS
flowCore
updated 16 months ago by
SamGG
▴ 360 • written 16 months ago by
das.traveller
• 0
1
vote
1
reply
688
views
How to read fcs3.2 files
flowCore
updated 16 months ago by
James W. MacDonald
68k • written 17 months ago by
Gabriel
▴ 10
0
votes
2
replies
750
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec
read.FCS
flowCore
17 months ago
mrescan
• 0
0
votes
0
replies
698
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore
cytoMEM
21 months ago
aguirre
▴ 20
0
votes
2
replies
826
views
Unable to access Git links.
Source
flowCore
Repository
git
updated 2.0 years ago by
shepherl
4.1k • written 2.0 years ago by
dominic.r
• 0
0
votes
0
replies
686
views
Merging 2 staining panels
FlowCytometry
flowCore
2.2 years ago
michaela.gregorova13
• 0
0
votes
0
replies
898
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.2 years ago
pawel.malecki
• 0
2
votes
1
reply
1.4k
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
2.4 years ago
aguirre
▴ 20
0
votes
0
replies
814
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
2.5 years ago
Dennis.hinkel
• 0
2
votes
9
replies
2.5k
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 2.6 years ago by
SamGG
▴ 360 • written 2.6 years ago by
alex
• 0
0
votes
0
replies
1.1k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore
FlowCytometryData
flowTrans
flow
3.1 years ago
hamiltond
▴ 10
0
votes
0
replies
1.4k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore
FlowCytometryData
3.1 years ago
hamiltond
▴ 10
0
votes
0
replies
976
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.1 years ago
nmchavez
• 0
0
votes
0
replies
898
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore
flowDensity
3.1 years ago
nmchavez
• 0
0
votes
0
replies
813
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
3.3 years ago
markkelly1983
▴ 20
2
votes
1
reply
1.2k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.1 years ago by
Eduardo
• 0 • written 3.4 years ago by
markkelly1983
▴ 20
0
votes
0
replies
928
views
Job:
Bioconductor developer
FlowCytometry
flowCore
3.4 years ago
markkelly1983
▴ 20
0
votes
1
reply
887
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS
flowCore
3.5 years ago
Rainer
• 0
0
votes
1
reply
1.2k
views
Undefined columns error R cytometry analysis
flowCore
ggcyto
FlowCytometryData
updated 3.6 years ago by
Jiang, Mike
★ 1.3k • written 4.0 years ago by
Elizabeth
• 0
0
votes
1
reply
2.0k
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 3.6 years ago by
Jiang, Mike
★ 1.3k • written 4.0 years ago by
Khai-Chuong
• 0
0
votes
1
reply
1.6k
views
Re-naming $PnS parameters
flowCore
updated 4.1 years ago by
SamGG
▴ 360 • written 4.1 years ago by
jasonemo
• 0
2
votes
3
replies
1.4k
views
Getting number of datasets with flowCore
flowCore
updated 4.1 years ago by
SamGG
▴ 360 • written 4.1 years ago by
mark.holmes
▴ 10
1
vote
1
reply
2.0k
views
Error when using read.FCS
compensation
flowCore
FlowCore
read.FCS
updated 4.2 years ago by
SamGG
▴ 360 • written 4.2 years ago by
Pepijn
• 0
0
votes
0
replies
895
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
4.4 years ago
GFM
▴ 20
1
vote
6
replies
1.8k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.5 years ago by
SamGG
▴ 360 • written 4.5 years ago by
Rainer
• 0
0
votes
8
replies
2.4k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow
flowCore
updated 19 months ago by
osayou
• 0 • written 4.5 years ago by
anders.tondell
▴ 30
3
votes
10
replies
3.2k
views
Reading multiple data segments from FCS 3.0 file
flowCore
flow cytometry
FCS 3.0
ncdfFlowSet
updated 2.9 years ago by
SamGG
▴ 360 • written 5.0 years ago by
alavy
▴ 30
0
votes
1
reply
976
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 5.0 years ago by
Jake Wagner
▴ 310 • written 5.1 years ago by
noviello
• 0
2
votes
2
replies
2.1k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow
flowCore
ncdfFlowSet
read.FCS
updated 5.0 years ago by
Jake Wagner
▴ 310 • written 5.0 years ago by
alavy
▴ 30
4
votes
5
replies
1.6k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 5.1 years ago by
Jake Wagner
▴ 310 • written 5.1 years ago by
stefankolling+github
• 0
0
votes
0
replies
828
views
Strange problem with parameter range when creating a flowFPModel
flowCore
flowFP
flowFPModel
5.2 years ago
palffy.karoly
• 0
0
votes
2
replies
1.3k
views
flowCore not displaying FL gates
flowCore
updated 5.3 years ago by
Jiang, Mike
★ 1.3k • written 5.3 years ago by
rleenay
• 0
2
votes
4
replies
1.5k
views
Mathematical operations in FCS file
flowCore
flow cytometry
5.4 years ago
chandra.swarnendu
• 0
0
votes
1
reply
2.3k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.5 years ago by
Jiang, Mike
★ 1.3k • written 5.5 years ago by
gene_bioconductor
▴ 10
1
vote
3
replies
1.6k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.6 years ago
cahyasu88
• 0
1
vote
0
replies
1.2k
views
Cell cycle analysis subG1
flowploidy
apoptosis
cell cycle
flowCore
5.7 years ago
nina.hahn
• 0
3
votes
2
replies
1.3k
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
5.7 years ago
Brent.OCarrigan
• 0
1
vote
2
replies
2.5k
views
flowCore issue: creating and applying new compensation matrix
compensate()
flowCore
5.8 years ago
rdlr
• 0
0
votes
1
reply
990
views
Issue creating transformed filter in flowCore
flowCore
updated 5.8 years ago by
Jake Wagner
▴ 310 • written 5.8 years ago by
npb27
• 0
4
votes
4
replies
1.8k
views
FCSTransTransform() implementation in flowCore
flowCore
FCSTrans
flow cytometry
updated 5.9 years ago by
Jake Wagner
▴ 310 • written 5.9 years ago by
Nik Tuzov
▴ 90
3
votes
1
reply
2.5k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 5.9 years ago by
Jake Wagner
▴ 310 • written 5.9 years ago by
apurva
• 0
2
votes
3
replies
2.3k
views
how to use the flowCore spillover function
flowCore
spillover
gatingset2FlowJO
updated 5.9 years ago by
Jake Wagner
▴ 310 • written 5.9 years ago by
k.teijgeler
• 0
1
vote
4
replies
2.2k
views
flowCore install missing a dependency?
flowCore
Installation
dependency
updated 5.9 years ago by
Jake Wagner
▴ 310 • written 5.9 years ago by
Robert Baer
▴ 70
0
votes
0
replies
969
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy
flowcore
flow cytometry
6.1 years ago
kovacik
• 0
1
vote
5
replies
2.3k
views
Flow cytometry optimization of transformation parameters
flow Cytometry
flowCore
flowTrans
6.1 years ago
carlos.x.martinez-fleites
• 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore
flowUtils
gatingML
updated 6.1 years ago by
Jiang, Mike
★ 1.3k • written 6.1 years ago by
Andrew Box
▴ 10
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Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
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by
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The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
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All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
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> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
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Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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