Bioconductor Flowclean

Showing : flowclean • reset

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flowClean

7.4 years ago simeen.malik • 0

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flowClean

7.6 years ago fergo1988 • 0

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flowclean flowQ bioconductor lattice

updated 7.9 years ago by Mike Smith ★ 6.6k • written 7.9 years ago by larisa.espinoza • 0

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flow cytometry flowcore flowclean rflowcyt flowworkspace

updated 9.3 years ago by Jiang, Mike ★ 1.3k • written 9.3 years ago by magomudw • 0

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flowClean flowDensity flowClean flowDensity

updated 10.7 years ago by Justin Meskas ▴ 60 • written 10.7 years ago by Kipper Fletez-Brant ▴ 150

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flowClean flowClean

10.7 years ago Kipper Fletez-Brant ▴ 150

6 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Votes

A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

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