Showing : flowSOM • reset
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FlowSOM library requires igraph but igraph does not install
FlowSOM
written 3 months ago by • 0
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2
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604
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FlowSOM error system.file()
FlowSOM
updated 12 months ago by ▴ 350 • written 12 months ago by • 0
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454
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Identifying populations within a FlowSOM tree
FlowSOM
12 months ago agus_rizzo • 0
1
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3
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937
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FlowSOM Error in flowCore::read.FCS
FlowSOM
updated 12 months ago by ▴ 350 • written 12 months ago by • 0
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677
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FlowSOM with unrelated channels
FlowSOM cytofWorkflow
updated 20 months ago by ▴ 70 • written 20 months ago by • 0
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Job: Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace CytoGLMM FlowSOM
3.0 years ago hbolouri • 0
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2
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1.0k
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FlowSOM dependencies - cytoML and flowutils
FlowSOM
3.1 years ago jakub.savara • 0
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1.1k
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Help with FlowSOM
FlowSOM
3.4 years ago ismail.ameran • 0
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6
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2.0k
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Running FlowSOM in R problem
FlowSOM
updated 4.0 years ago by ▴ 10 • written 4.0 years ago by • 0
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0
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1.6k
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Error from FlowSom to Cytofast
Cytofast FlowSom CyTOF fcs files
4.1 years ago domenico.somma • 0
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1
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1.2k
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[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.6 years ago fabrizio.benedetti.82 • 0
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1.6k
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FlowSOM and ConsensusClusterPlus: reproducibility issue
flowsom consensusclusterplus
7.7 years ago Lukas Weber • 0
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1
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1.3k
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multiple errors in flowSOM- with readinput and metaClustering_consensus
flowcore flowsom
8.2 years ago jeremyeadler • 0
13 results • Page 1 of 1
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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables by ATpoint ★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k
The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Votes
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
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