Showing : flowCore • reset
0
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158
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Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
3 months ago vpochic • 0
0
votes
0
replies
480
views
How to fix fix $PnR in flowCore
flowCore
updated 10 months ago by 68k • written 10 months ago by • 0
1
vote
1
reply
697
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 13 months ago by ▴ 360 • written 14 months ago by ▴ 30
0
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0
replies
617
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
15 months ago info ▴ 10
0
votes
6
replies
1.8k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 16 months ago by ▴ 360 • written 16 months ago by • 0
1
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1
reply
688
views
How to read fcs3.2 files
flowCore
updated 16 months ago by 68k • written 16 months ago by ▴ 10
0
votes
2
replies
750
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
17 months ago mrescan • 0
0
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0
replies
698
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
21 months ago aguirre ▴ 20
0
votes
2
replies
824
views
Unable to access Git links.
Source flowCore Repository git
updated 24 months ago by 4.1k • written 24 months ago by • 0
0
votes
0
replies
686
views
Merging 2 staining panels
FlowCytometry flowCore
2.2 years ago michaela.gregorova13 • 0
0
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0
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897
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.2 years ago pawel.malecki • 0
2
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1
reply
1.4k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.4 years ago aguirre ▴ 20
0
votes
0
replies
814
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.5 years ago Dennis.hinkel • 0
2
votes
9
replies
2.5k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.6 years ago by ▴ 360 • written 2.6 years ago by • 0
0
votes
0
replies
1.1k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
3.1 years ago hamiltond ▴ 10
0
votes
0
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1.4k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
3.1 years ago hamiltond ▴ 10
0
votes
0
replies
975
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.1 years ago nmchavez • 0
0
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0
replies
898
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
3.1 years ago nmchavez • 0
0
votes
0
replies
812
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.3 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.2k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.1 years ago by • 0 • written 3.4 years ago by ▴ 20
0
votes
0
replies
927
views
Job: Bioconductor developer
FlowCytometry flowCore
3.4 years ago markkelly1983 ▴ 20
0
votes
1
reply
886
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.5 years ago Rainer • 0
0
votes
1
reply
1.2k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.6 years ago by ★ 1.3k • written 4.0 years ago by • 0
0
votes
1
reply
2.0k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.6 years ago by ★ 1.3k • written 4.0 years ago by • 0
0
votes
1
reply
1.6k
views
Re-naming $PnS parameters
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by • 0
2
votes
3
replies
1.4k
views
Getting number of datasets with flowCore
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by ▴ 10
1
vote
1
reply
2.0k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 4.2 years ago by ▴ 360 • written 4.2 years ago by • 0
0
votes
0
replies
892
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.4 years ago GFM ▴ 20
1
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6
replies
1.8k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.5 years ago by ▴ 360 • written 4.5 years ago by • 0
0
votes
8
replies
2.4k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 19 months ago by • 0 • written 4.5 years ago by ▴ 30
3
votes
10
replies
3.2k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.9 years ago by ▴ 360 • written 5.0 years ago by ▴ 30
0
votes
1
reply
975
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.0 years ago by ▴ 310 • written 5.1 years ago by • 0
2
votes
2
replies
2.1k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by ▴ 30
4
votes
5
replies
1.6k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.1 years ago by ▴ 310 • written 5.1 years ago by • 0
0
votes
0
replies
826
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
5.1 years ago palffy.karoly • 0
0
votes
2
replies
1.3k
views
flowCore not displaying FL gates
flowCore
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by • 0
2
votes
4
replies
1.5k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.4 years ago chandra.swarnendu • 0
0
votes
1
reply
2.3k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by ▴ 10
1
vote
3
replies
1.6k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.6 years ago cahyasu88 • 0
1
vote
0
replies
1.2k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.7 years ago nina.hahn • 0
3
votes
2
replies
1.3k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.7 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.5k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.8 years ago rdlr • 0
0
votes
1
reply
990
views
Issue creating transformed filter in flowCore
flowCore
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
4
votes
4
replies
1.8k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by ▴ 90
3
votes
1
reply
2.5k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by • 0
2
votes
3
replies
2.3k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by • 0
1
vote
4
replies
2.2k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by ▴ 70
0
votes
0
replies
968
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
6.0 years ago kovacik • 0
1
vote
5
replies
2.3k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
6.1 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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