Showing : flowCore • reset
0
votes
0
replies
136
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
12 weeks ago vpochic • 0
0
votes
0
replies
466
views
How to fix fix $PnR in flowCore
flowCore
updated 10 months ago by 68k • written 10 months ago by • 0
1
vote
1
reply
682
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 12 months ago by ▴ 360 • written 13 months ago by ▴ 30
0
votes
0
replies
596
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
15 months ago info ▴ 10
0
votes
6
replies
1.8k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 15 months ago by ▴ 360 • written 16 months ago by • 0
1
vote
1
reply
677
views
How to read fcs3.2 files
flowCore
updated 16 months ago by 68k • written 16 months ago by ▴ 10
0
votes
2
replies
736
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
17 months ago mrescan • 0
0
votes
0
replies
680
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
20 months ago aguirre ▴ 20
0
votes
2
replies
816
views
Unable to access Git links.
Source flowCore Repository git
updated 23 months ago by 4.1k • written 23 months ago by • 0
0
votes
0
replies
674
views
Merging 2 staining panels
FlowCytometry flowCore
2.1 years ago michaela.gregorova13 • 0
0
votes
0
replies
876
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.2 years ago pawel.malecki • 0
2
votes
1
reply
1.4k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.4 years ago aguirre ▴ 20
0
votes
0
replies
807
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.4 years ago Dennis.hinkel • 0
2
votes
9
replies
2.4k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.5 years ago by ▴ 360 • written 2.5 years ago by • 0
0
votes
0
replies
1.1k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
3.0 years ago hamiltond ▴ 10
0
votes
0
replies
1.4k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
3.0 years ago hamiltond ▴ 10
0
votes
0
replies
965
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.0 years ago nmchavez • 0
0
votes
0
replies
879
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
3.0 years ago nmchavez • 0
0
votes
0
replies
802
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.3 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.2k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.0 years ago by • 0 • written 3.3 years ago by ▴ 20
0
votes
0
replies
917
views
Job: Bioconductor developer
FlowCytometry flowCore
3.3 years ago markkelly1983 ▴ 20
0
votes
1
reply
877
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.4 years ago Rainer • 0
0
votes
1
reply
1.2k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.5 years ago by ★ 1.3k • written 3.9 years ago by • 0
0
votes
1
reply
2.0k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.5 years ago by ★ 1.3k • written 3.9 years ago by • 0
0
votes
1
reply
1.6k
views
Re-naming $PnS parameters
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by • 0
2
votes
3
replies
1.4k
views
Getting number of datasets with flowCore
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by ▴ 10
1
vote
1
reply
2.0k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 4.2 years ago by ▴ 360 • written 4.2 years ago by • 0
0
votes
0
replies
879
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.4 years ago GFM ▴ 20
1
vote
6
replies
1.8k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.4 years ago by ▴ 360 • written 4.4 years ago by • 0
0
votes
8
replies
2.3k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 18 months ago by • 0 • written 4.5 years ago by ▴ 30
3
votes
10
replies
3.2k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.9 years ago by ▴ 360 • written 4.9 years ago by ▴ 30
0
votes
1
reply
958
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.9 years ago by ▴ 310 • written 5.0 years ago by • 0
2
votes
2
replies
2.1k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by ▴ 30
4
votes
5
replies
1.6k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by • 0
0
votes
0
replies
814
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
5.1 years ago palffy.karoly • 0
0
votes
2
replies
1.3k
views
flowCore not displaying FL gates
flowCore
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
2
votes
4
replies
1.5k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.3 years ago chandra.swarnendu • 0
0
votes
1
reply
2.3k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by ▴ 10
1
vote
3
replies
1.6k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.6 years ago cahyasu88 • 0
1
vote
0
replies
1.1k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.7 years ago nina.hahn • 0
3
votes
2
replies
1.3k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.7 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.5k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.7 years ago rdlr • 0
0
votes
1
reply
977
views
Issue creating transformed filter in flowCore
flowCore
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
4
votes
4
replies
1.7k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by ▴ 90
3
votes
1
reply
2.5k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
2
votes
3
replies
2.3k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
1
vote
4
replies
2.2k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by ▴ 70
0
votes
0
replies
959
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
6.0 years ago kovacik • 0
1
vote
5
replies
2.2k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
6.1 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards • All
Popular Question to bd2000 ▴ 30
Popular Question to shepherl 4.1k
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to Gordon Smyth 52k
Locations • All
The city by the bay, 55 minutes ago
China, 3 hours ago
UPF, Barcelona, Spain, 3 hours ago
United Kingdom, 4 hours ago
United Kingdom, 4 hours ago
Traffic: 508 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6