Showing : flowCore • reset
0
votes
0
replies
65
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
26 days ago vpochic • 0
0
votes
0
replies
390
views
How to fix fix $PnR in flowCore
flowCore
updated 8 months ago by 67k • written 8 months ago by • 0
1
vote
1
reply
599
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 10 months ago by ▴ 360 • written 11 months ago by ▴ 30
0
votes
0
replies
545
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
12 months ago info ▴ 10
0
votes
6
replies
1.6k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 13 months ago by ▴ 360 • written 13 months ago by • 0
1
vote
1
reply
639
views
How to read fcs3.2 files
flowCore
updated 14 months ago by 67k • written 14 months ago by ▴ 10
0
votes
2
replies
698
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
15 months ago mrescan • 0
0
votes
0
replies
629
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
18 months ago aguirre ▴ 20
0
votes
2
replies
758
views
Unable to access Git links.
Source flowCore Repository git
updated 21 months ago by 4.1k • written 21 months ago by • 0
0
votes
0
replies
628
views
Merging 2 staining panels
FlowCytometry flowCore
23 months ago michaela.gregorova13 • 0
0
votes
0
replies
806
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
24 months ago pawel.malecki • 0
2
votes
1
reply
1.3k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.2 years ago aguirre ▴ 20
0
votes
0
replies
757
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.2 years ago Dennis.hinkel • 0
2
votes
9
replies
2.2k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.4 years ago by ▴ 360 • written 2.4 years ago by • 0
0
votes
0
replies
1.0k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.8 years ago hamiltond ▴ 10
0
votes
0
replies
1.3k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.9 years ago hamiltond ▴ 10
0
votes
0
replies
920
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.9 years ago nmchavez • 0
0
votes
0
replies
820
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.9 years ago nmchavez • 0
0
votes
0
replies
771
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.1 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.1k
views
Difference in output of logicle transform in different languages
flowCore
updated 2.9 years ago by • 0 • written 3.2 years ago by ▴ 20
0
votes
0
replies
888
views
Job: Bioconductor developer
FlowCytometry flowCore
3.2 years ago markkelly1983 ▴ 20
0
votes
1
reply
851
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.3 years ago • updated 3.2 years ago Rainer • 0
0
votes
1
reply
1.1k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.4 years ago by ★ 1.3k • written 3.8 years ago by • 0
0
votes
1
reply
1.9k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.4 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
1
reply
1.5k
views
Re-naming $PnS parameters
flowCore
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by • 0
2
votes
3
replies
1.3k
views
Getting number of datasets with flowCore
flowCore
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by ▴ 10
1
vote
1
reply
1.9k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 4.0 years ago by ▴ 360 • written 4.0 years ago by • 0
0
votes
0
replies
834
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.2 years ago GFM ▴ 20
1
vote
6
replies
1.7k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.2 years ago by ▴ 360 • written 4.2 years ago by • 0
0
votes
8
replies
2.2k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 16 months ago by • 0 • written 4.3 years ago by ▴ 30
3
votes
10
replies
3.0k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.7 years ago by ▴ 360 • written 4.7 years ago by ▴ 30
0
votes
1
reply
904
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.7 years ago by ▴ 310 • written 4.9 years ago by • 0
2
votes
2
replies
2.0k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.8 years ago by ▴ 310 • written 4.8 years ago by ▴ 30
4
votes
5
replies
1.5k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.8 years ago by ▴ 310 • written 4.8 years ago by • 0
0
votes
0
replies
769
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.9 years ago palffy.karoly • 0
0
votes
2
replies
1.2k
views
flowCore not displaying FL gates
flowCore
updated 5.0 years ago by ★ 1.3k • written 5.0 years ago by • 0
2
votes
4
replies
1.4k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.2 years ago chandra.swarnendu • 0
0
votes
1
reply
2.2k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 10
1
vote
3
replies
1.5k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.4 years ago cahyasu88 • 0
1
vote
0
replies
1.1k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.5 years ago nina.hahn • 0
3
votes
2
replies
1.2k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.5 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.3k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.5 years ago rdlr • 0
0
votes
1
reply
939
views
Issue creating transformed filter in flowCore
flowCore
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
4
votes
4
replies
1.7k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ▴ 90
3
votes
1
reply
2.4k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
2
votes
3
replies
2.1k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
1
vote
4
replies
2.1k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.7 years ago by ▴ 310 • written 5.7 years ago by ▴ 70
0
votes
0
replies
923
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.8 years ago kovacik • 0
1
vote
5
replies
2.1k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.9 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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