Bioconductor FlowAI

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flowAI

updated 4 months ago by mongianni1 • 0 • written 10 months ago by Olena • 0

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flowAI

written 3.7 years ago by msoares • 0

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flowAI

17 months ago Simoluc • 0

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FlowAI FlowJo

3.6 years ago akaw3 • 0

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software error flow cytometry ggcyto flowAI

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by Robert Baer ▴ 70

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flowAI software error

4.7 years ago christopher.hall • 0

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flowAI flow_auto_qc QC flow cytometry

updated 5.2 years ago by gianni • 0 • written 5.2 years ago by vinko.tosevski • 0

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flowAI

6.4 years ago crostomily • 0

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

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C: How does edgeR cpm function calculate log(CPM) values?

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

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