Bioconductor FitTimeSeries

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edgeR deseq2 rna-seq timecourse fittimeseries

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by jpsf • 0

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metagenomeseq fittimeseries

updated 8.1 years ago by Joseph Nathaniel Paulson ▴ 280 • written 8.1 years ago by wijera81 • 0

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metagenomeseq fittimeseries

updated 8.3 years ago by Joseph Nathaniel Paulson ▴ 280 • written 8.3 years ago by giulia.masetti • 0

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1.5k

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edge timecourse fittimeseries

updated 9.0 years ago by Andrew Bass • 0 • written 9.0 years ago by warren.anderson • 0

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metagenomeSeq fitTimeSeries microbiome

9.8 years ago noelle.noyes ▴ 30

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

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