Bioconductor Fishpond

Showing : fishpond • reset

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230

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fishpond fish

updated 11 days ago by Michael Love 43k • written 12 days ago by brown.annaleigh • 0

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645

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fishpond tximport tximeta

updated 9 days ago by Im • 0 • written 14 days ago by brown.annaleigh • 0

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301

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fishpond DESeq2 rnaseqDTU

updated 22 days ago by Michael Love 43k • written 22 days ago by muhammadsohailraza • 0

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661

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swish salmon fishpond

updated 12 months ago by Michael Love 43k • written 12 months ago by Nicholas • 0

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1.4k

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fishpond swish

19 months ago Miguel ▴ 20

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956

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rna-seq salmon fishpond swish

updated 19 months ago by Michael Love 43k • written 19 months ago by samuelcjx • 0

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1.1k

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fishpond tximeta DESeq2

updated 16 months ago by Michael Love 43k • written 24 months ago by Rihards Saksis • 0

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1.4k

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fishpond DESeq2

updated 21 months ago by Michael Love 43k • written 2.5 years ago by alexyz • 0

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1.7k

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swish fishpond DifferentialExpression

2.5 years ago jvandinter • 0

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2.0k

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swish fishpond GenomicFeatures tximeta

updated 2.5 years ago by Michael Love 43k • written 2.8 years ago by jvandinter • 0

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1.7k

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fishpond swish

2.9 years ago msll0802 • 0

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1.8k

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salmon rna-seq swish bootstrap fishpond

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by samuelcjx • 0

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1.4k

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tximeta DESeq2 swish fishpond

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by jeremymsimon ▴ 20

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1.3k

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fishpond

3.4 years ago Jean • 0

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2.7k

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DESeq2 fishpond salmon swish

3.4 years ago Qin ▴ 10

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1.7k

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tximeta swish fishpond

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by Jack Riley • 0

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1.7k

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Swish fishpond

4.0 years ago • updated 3.9 years ago 675743 ▴ 20

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1.6k

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swish fishpond

4.3 years ago thomas.dugedebernonville • 0

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1.1k

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fishpond swish

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by 1911449 • 0

19 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0