Bioconductor Filtervcf

Showing : filtervcf • reset

votes

replies

3.0k

views

variantannotation vcf readvcf filtervcf scanvcfparam

7.5 years ago Didi ▴ 10

votes

replies

3.4k

views

filtervcf

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by Bogdan ▴ 670

votes

1.1k

views

filtervcf variantannotation

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by stephen sefick ▴ 60

votes

1.4k

views

variantannotation filtervcf

updated 9.3 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by TimothéeFlutre ▴ 80

votes

replies

1.5k

views

variantannotation vcf filtervcf

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by TimothéeFlutre ▴ 80

votes

replies

1.3k

views

variantannotation filtervcf vcf

updated 9.3 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by TimothéeFlutre ▴ 80

votes

replies

1.7k

views

VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by pau.puigdevall • 0

votes

replies

1.7k

views

VariantAnnotation filterVcf

9.5 years ago pau.puigdevall • 0

votes

replies

2.4k

views

variantannotation filterVcf readvcfasvranges filterRules

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by Sigve Nakken ▴ 50

9 results • Page 1 of 1

Recent ...

Replies

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

Awards • All

Popular Question to bastien_chassagnol • 0