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filterVcf
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2
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5
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2.7k
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VariantAnnotation: Error with ScanVcfParam
variantannotation
vcf
readvcf
filtervcf
scanvcfparam
6.9 years ago
Didi
▴ 10
5
votes
13
replies
3.1k
views
about filtering variants in a VCF file
filtervcf
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.0k
views
VariantAnnotation -filterVcf/FilterRules - 3 fxns as list to FilterRules throughs and erro
filtervcf
variantannotation
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
stephen sefick
▴ 60
2
votes
1
reply
1.2k
views
Error in extractROWS(x, eval(filter, x))
variantannotation
filtervcf
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
TimothéeFlutre
▴ 80
2
votes
2
replies
1.4k
views
a filter works alone but not with other filters
variantannotation
vcf
filtervcf
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
TimothéeFlutre
▴ 80
5
votes
2
replies
1.2k
views
filter "isSnp" for VCF
variantannotation
filtervcf
vcf
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
TimothéeFlutre
▴ 80
0
votes
2
replies
1.5k
views
filterVcf: error with param argument
VariantAnnotation
filterVcf
ScanVcfParam
vcf
writeVcf
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
pau.puigdevall
• 0
3
votes
5
replies
1.6k
views
filterVcf: crash with isSNV() filter argument
VariantAnnotation
filterVcf
8.9 years ago
pau.puigdevall
• 0
4
votes
4
replies
2.1k
views
readVcfAsVRanges + FilterRules
variantannotation
filterVcf
readvcfasvranges
filterRules
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
Sigve Nakken
▴ 50
9 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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