Bioconductor Filter

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1.1k

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filter deseq2

updated 22 months ago by Michael Love 43k • written 23 months ago by PD • 0

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1.4k

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R filter limma Normalization Microarray

23 months ago Abdul ▴ 20

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746

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filter gate_quad_tmix gt_gating

3.0 years ago • updated 2.9 years ago Pierre • 0

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938

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flowCore openCyto Summary Result Filter

updated 4.8 years ago by Jake Wagner ▴ 310 • written 5.0 years ago by noviello • 0

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1.7k

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RNA WGCNA filter

5.7 years ago modarzi ▴ 10

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1.1k

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filter deseq2

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by charles.foster ▴ 170

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1.4k

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rtracklayer gff filter

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by alslonik • 0

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2.1k

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deseq2 filter genefilter

updated 7.3 years ago by Michael Love 43k • written 7.4 years ago by Björn • 0

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4.3k

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loop filter

written 7.3 years ago by kritikamish99 ▴ 10

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3.8k

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DGElist filter edgeR

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by alakatos ▴ 130

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1.5k

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limma filter genelist differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by bi_Scholar • 0

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1.2k

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missing data filter

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by rgescudero • 0

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1.5k

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flowcore gate subsetting filter

updated 9.5 years ago by Jiang, Mike ★ 1.3k • written 9.5 years ago by peterfoster ▴ 20

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3.0k

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probe filter subset gene symbol affy

10.0 years ago alakatos ▴ 130

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3.9k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.0 years ago by James W. MacDonald 68k • written 10.1 years ago by svlachavas ▴ 840

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3.4k

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deseq filter reads

10.2 years ago • updated 10.1 years ago ccheung • 0

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1.5k

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variantannotation vcf fixed filter

10.2 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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