Bioconductor Featurerequest

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1.5k

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Rsubread featurecounts featurerequest

6.9 years ago alessandro.pastore ▴ 20

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1.2k

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bioconductor featurerequest

updated 7.3 years ago by Sean Davis 21k • written 7.4 years ago by Justin Meskas ▴ 60

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1.2k

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customProDB featurerequest

updated 8.6 years ago by Dan Tenenbaum ★ 8.2k • written 8.6 years ago by matt.chambers42 ▴ 10

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1.4k

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ChIPseeker featurerequest tss

updated 8.8 years ago by Guangchuang Yu ★ 1.2k • written 8.8 years ago by balwierz ▴ 40

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1.2k

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GenomicRanges featurerequest

9.3 years ago Keith Hughitt ▴ 180

5 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Votes

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k